Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,558,983 – 1,559,073 |
Length | 90 |
Max. P | 0.956186 |
Location | 1,558,983 – 1,559,073 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 98.25 |
Mean single sequence MFE | -22.96 |
Consensus MFE | -22.64 |
Energy contribution | -22.64 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.99 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1558983 90 - 22224390 CCAUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA ....(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))).............. ( -22.80) >DroSec_CAF1 21338 90 - 1 CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA ..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))))............. ( -23.00) >DroSim_CAF1 23267 90 - 1 CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA ..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))))............. ( -23.00) >DroEre_CAF1 23054 90 - 1 CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA---GCCCUUUGAUUAAUUAA ..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))...---))))............. ( -23.00) >DroYak_CAF1 21809 93 - 1 CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCAGCAGCCCUUUGAUUAAUUAA ..(.(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))......))))............. ( -23.00) >consensus CCGUGGCCAGCUUAAUUGUUUUCAAUUAACAAGCAAAUUGGAUGUUUUUGUCUGCGUGGCAGAGGCAACCUCA___GCCCUUUGAUUAAUUAA ....(((..(((((((((....))))))...))).....((.((((((((((.....)))))))))).))......))).............. (-22.64 = -22.64 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:25 2006