Locus 5467

Sequence ID X_DroMel_CAF1
Location 14,210,972 – 14,211,067
Length 95
Max. P 0.828577
window8867

overview

Window 7

Location 14,210,972 – 14,211,067
Length 95
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 85.11
Mean single sequence MFE -19.95
Consensus MFE -13.59
Energy contribution -13.90
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -2.10
Structure conservation index 0.68
SVM decision value 0.71
SVM RNA-class probability 0.828577
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14210972 95 + 22224390
UCCUUGUUUUCCUCCAGGCAUCCUGGCAACCUGGCAACCUGGC-------AACACGGCAACCUGGCAUCCCAGCACUUGUUAUAAAUCACAAAACAAGUAAA
..((((((((...(((((...((.(....)..))...))))).-------.....(((((.((((....))))...))))).........)))))))).... ( -22.50)
>DroSec_CAF1 122174 79 + 1
UCCUUGUUUCCCUCCAGGCAUCCUGGC-----------------------AACACGGCAACCUGGCAUCCCAGCACUUGUUAUAAAUCACAAAACAAGUAAA
.....(((.....(((((...((((..-----------------------..)).))...)))))......)))(((((((...........)))))))... ( -17.60)
>DroSim_CAF1 98321 95 + 1
UCCUUGUUUCCCUCCAGGCAUCCUGGCAACCUGGCAACACGGC-------AACACGGCAACCUGGCAUCCCAGCACUUGUUAUAAAUCACAAAACAAGUAAA
.((.((((.((..(((((...))))).....((....)).)).-------)))).))....((((....)))).(((((((...........)))))))... ( -21.80)
>DroEre_CAF1 109827 102 + 1
UCCUUGCUUUCCUCAAGGCAUCCUGGCAUCCUGGCAACCUGGCAACCUGCAACACGGCAACCUGGCAUCCUAGCACUUGUUAUAAAUCACAAAACAAGUAAA
....((((((....))))))..((((.((((.((...((((((.....))..)).))...)).)).)).)))).(((((((...........)))))))... ( -17.90)
>consensus
UCCUUGUUUCCCUCCAGGCAUCCUGGCAACCUGGCAACCUGGC_______AACACGGCAACCUGGCAUCCCAGCACUUGUUAUAAAUCACAAAACAAGUAAA
..(((((((....(((((...))))).............................(((((.((((....))))...)))))..........))))))).... (-13.59 = -13.90 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:36 2006