Locus 5466

Sequence ID X_DroMel_CAF1
Location 14,208,074 – 14,208,165
Length 91
Max. P 0.533680
window8866

overview

Window 6

Location 14,208,074 – 14,208,165
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -20.06
Consensus MFE -11.84
Energy contribution -12.52
Covariance contribution 0.68
Combinations/Pair 1.19
Mean z-score -1.74
Structure conservation index 0.59
SVM decision value 0.00
SVM RNA-class probability 0.533680
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14208074 91 + 22224390
UGGGCGGAUGAUUCAAAGUGCAACAUUUUCACUGCCUGAGAUUUUAAAUUAAAAUCUUUCAAAAAGAGGAAAGAUAGCCACAUUUUUGGUA
.((((((.(((....(((((...))))))))))))))................(((((((........))))))).((((......)))). ( -19.60)
>DroSec_CAF1 119388 91 + 1
UGGGCGGAUGAUUCAAAGUGCAACAUUUUCACUGCCUGAGAUUUUUAAUUAAAAUCUAGGAAAAAGAGGAAAGAUAACCAUAUUUUUGGUA
((.((.((....))...)).))...(((((.((.(((.(((((((.....))))))))))....)).)))))....((((......)))). ( -18.60)
>DroSim_CAF1 95471 91 + 1
UGGGCGGAUGAUUCAAAGUGCAACAUUUUCACUGCCUGAGAUUUUUAAUUAAAAUCUUGCAAAAAGAGGAAAGAUAGCCACAUUUUUGGUA
.((((((.(((....(((((...))))))))))))))((((((((.....)))))))).((((((..((........))...))))))... ( -19.80)
>DroEre_CAF1 106992 70 + 1
UGUGCGGAGGAUUCAAAGUGCAACAUUUUCACUGGCGGAGAUUUUUAAUUGAAAUCUCCCAAAAAGUGGC---------------------
((..(.(......)...)..))......(((((.(.(((((((((.....))))))))))....))))).--------------------- ( -18.90)
>DroYak_CAF1 109178 91 + 1
UGGACGGAUGACUCAAAAUGUAACAUUUUGACUGCCGGAGAUUUUUAAUUAAAAUCUCCCUAAAAGGGGCAAUAUAGCCACAAUUCUGGUA
....((((....((((((((...)))))))).(((((((((((((.....)))))))))((....)))))).............))))... ( -23.40)
>consensus
UGGGCGGAUGAUUCAAAGUGCAACAUUUUCACUGCCUGAGAUUUUUAAUUAAAAUCUCCCAAAAAGAGGAAAGAUAGCCACAUUUUUGGUA
..(((((.(((....(((((...)))))))))))))(((((((((.....))))))))).................((((......)))). (-11.84 = -12.52 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:36 2006