| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,207,542 – 14,207,635 |
| Length | 93 |
| Max. P | 0.534719 |
| Location | 14,207,542 – 14,207,635 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 86.70 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -19.90 |
| Energy contribution | -21.23 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14207542 93 - 22224390 CUUGGCCCUGGCGCGUGGCGAGUCAAAUGAAAAU------------GAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAGGCCAUUAAAGCGGGAGCCAAAUGG-- .(((((.((.((..(((((..(((..((....))------------((........)))))......(((.....)))...)))))....)).)).)))))....-- ( -24.70) >DroSec_CAF1 118891 93 - 1 UUUGGCCCUGGCGCGUGGCGAGUCAAAUGAAAAU------------GAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAGGCCAUUAAGGCGGGAGCCAAAUGG-- ((((((((((.(..(((((..(((..((....))------------((........)))))......(((.....)))...)))))...).)))).))))))...-- ( -28.20) >DroSim_CAF1 94927 99 - 1 CUUGGCCCUGGCGCGUGGCGAGUCAAAUGAAAAUGAA------AAUGAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAGGCCAUUAAGGCGGGAGCCAAAUGG-- .(((((((((.(..(((((..(((..((....))((.------.((....))....)))))......(((.....)))...)))))...).)))).)))))....-- ( -28.00) >DroEre_CAF1 106459 105 - 1 CUUGGCCCUGGCGCGUGGCGAGUCAAAUGAAAAUGAAAAUGAAAAUGAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAGGCCAUUAAGGCGGGAGCCAAAUGG-- .(((((((((.(..(((((..(((..((....))......((..((....))....)))))......(((.....)))...)))))...).)))).)))))....-- ( -28.00) >DroYak_CAF1 108661 93 - 1 CUUGGCCCUGGCGCGUGGCGAGUCAAAUGAAAAU------------GAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAGGCCAUUAAGGCGGGAGCCAAAUGG-- .(((((((((.(..(((((..(((..((....))------------((........)))))......(((.....)))...)))))...).)))).)))))....-- ( -27.60) >DroAna_CAF1 118088 85 - 1 CUGGAAAGUGGCGCGUGGCGGUUCAA-----AAU------------GAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAAGCCAUUAAGG-----GCCAAAGGAAU .(((..((((((..(((.(((((...-----.((------------....))..))))).)))....(((.....)))...))))))....-----.)))....... ( -20.70) >consensus CUUGGCCCUGGCGCGUGGCGAGUCAAAUGAAAAU____________GAAAAUGAAAUCGGCAUAAAACACGACAAGUGGAGGCCAUUAAGGCGGGAGCCAAAUGG__ .(((((((((.(..(((((...............................(((.......)))....(((.....)))...)))))...).)))).)))))...... (-19.90 = -21.23 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:35 2006