| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,205,873 – 14,205,970 |
| Length | 97 |
| Max. P | 0.994950 |
| Location | 14,205,873 – 14,205,970 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 70.45 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -9.91 |
| Energy contribution | -9.94 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.37 |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.994950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14205873 97 + 22224390 AGCAGCAGCCCAAAAAAAAAAAAGGCAA--GAAUAAUAUGUGCACAUGCCAAUG-------GGCUGA----UGCAAAAGUCGUGCUGUUUGGGCAGGACGAGGCAAUAC-C .(((.(((((((...........((((.--................))))..))-------))))).----))).....((((.((((....)))).))))........-. ( -28.35) >DroSec_CAF1 117202 92 + 1 AGCAGCAGCC--A---AAAAAAAGGCAG--GAAUAAUAUGUGCCCAUGCCAAUG-------GGCUGA----UGCAAAAGUCCUGCUGCUGGGUGAGGAUGAGGCAAUAC-C ((((((.(((--.---.......)))((--((.........((((((....)))-------)))...----........)))))))))).((((..(......)..)))-) ( -30.45) >DroSim_CAF1 93236 91 + 1 AGCAGCAGCCCAA---AAAAAAAGGCAG--AAAUAAUAUGUGCACAUGCCAAUG-------GGCUGA----UGCAAAAGUCCUGCUGCUGC---AGGAUGAGGCAAUAC-U .(((.(((((((.---........(((.--(.......).))).........))-------))))).----)))....(((((((....))---)))))..........-. ( -31.77) >DroEre_CAF1 104792 90 + 1 AGCGGCGGCCCA-----AAAGAAGGCAA--GAAUAAUAUGUGCAAAUGCCAUUU-------GUGCAAUAUGUGCAAAGGUCCUGCAGC------CGGACGAGGCGAUAC-C .((((.((((..-----......((((.--................)))).(((-------(..(.....)..)))))))))))).((------(......))).....-. ( -26.93) >DroYak_CAF1 107160 91 + 1 AGCUGCAGCCCAACAAAAAAAAAAGCAA--GAAUAAUAUGUGCAAAUGCCAAUG-------GGCUGA----UGCGAAGGUCCUGCUGC------AGGACGAGGCAAUAC-C .(((.(((((((............(((.--........)))((....))...))-------))))).----.......((((((...)------)))))..))).....-. ( -24.40) >DroAna_CAF1 116521 93 + 1 GGCAGCGAAUCCG----CAAAAAGGCAAUAAAAUAAUAA----AAAUGCGAAUGCAGUACAGUUUUG----UGUACAGGUCCUGUUAA------AGGAUCAGGGAAUAGAG .((((((....))----)......(((............----...)))...))).(((((......----))))).((((((.....------))))))........... ( -20.26) >consensus AGCAGCAGCCCAA___AAAAAAAGGCAA__GAAUAAUAUGUGCAAAUGCCAAUG_______GGCUGA____UGCAAAAGUCCUGCUGC______AGGACGAGGCAAUAC_C .....(((((.............((((...................))))...........))))).....(((....(((((...........)))))...)))...... ( -9.91 = -9.94 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:34 2006