Locus 5462

Sequence ID X_DroMel_CAF1
Location 14,203,025 – 14,203,141
Length 116
Max. P 0.892369
window8858

overview

Window 8

Location 14,203,025 – 14,203,141
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 95.52
Mean single sequence MFE -27.96
Consensus MFE -23.52
Energy contribution -24.16
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.84
SVM decision value 0.97
SVM RNA-class probability 0.892369
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14203025 116 + 22224390
UGGUGUCUGCGCUUAAUUACAUUUCAAAGGUUAUUAUGUAAUUAACCUCGGUCCUGGCGCUAACAUCACAAAGCUCCAAUGGUGAUGGAGCUGUCACAUUUCAUACCAAAAACUUC
((((((..((((((((((((((.............)))))))))((....))...)))))..))))))...(((((((.......)))))))........................ ( -30.22)
>DroSec_CAF1 114447 116 + 1
UGGUGUCUGCGCUUAAUUACAUUUCAAAGGUUAUUAUGUAAUUAACCUCGGUCCUGGCGCUAACAUCUCAAAGCUCCAAUGGUGAUGGAACUGUCACAUUUCAUGCCAAAAACUUC
.(((((..((((((((((((((.............)))))))))((....))...)))))..)))))............((((.((((((........))))))))))........ ( -26.12)
>DroSim_CAF1 89896 116 + 1
UGGUGUCUGCGCUUAAUUACAUUUCAAAGGUUAUUAUGUAAUUAACCUCGGUCCUGGCGCUAACAUCUCAAAGCUCCAAUGGUGAUGGAGCUGUCACAUUUCAUGCCAAAAACUUC
.(((((..((((((((((((((.............)))))))))((....))...)))))..)))))....(((((((.......)))))))........................ ( -29.32)
>DroEre_CAF1 101845 116 + 1
UGGUGUCUGCGCUUAAUUACAUUUCAAAGGUUAUUAUGUAAUUAACCUCGCUCCUGGUGCUAACAUCUCAAAGCUCCAAUGGCGAUGAAGCCGUCACAUUUCAUAUCAAAAACUUC
..(((.(.((..((((((((((.............))))))))))(.(((((..(((.(((..........))).)))..))))).)..)).).)))................... ( -26.62)
>DroYak_CAF1 104258 116 + 1
CGGUGUCUGCGCUUAAUUACAUUUCAAAGGUUAUUAUGUAAUUAACCUCGGUCCUGGCGCUAUCAUCUCAAAGCUCCAAUGGUGAUGGAGCUGUCACAUUUCAUUCCAAAAACGUC
.((((...((((((((((((((.............)))))))))((....))...)))))...))))....(((((((.......)))))))........................ ( -27.52)
>consensus
UGGUGUCUGCGCUUAAUUACAUUUCAAAGGUUAUUAUGUAAUUAACCUCGGUCCUGGCGCUAACAUCUCAAAGCUCCAAUGGUGAUGGAGCUGUCACAUUUCAUACCAAAAACUUC
.(((((..((((((((((((((.............)))))))))...........)))))..)))))....(((((((.......)))))))........................ (-23.52 = -24.16 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:29 2006