Locus 546

Sequence ID X_DroMel_CAF1
Location 1,556,813 – 1,556,919
Length 106
Max. P 0.666928
window859

overview

Window 9

Location 1,556,813 – 1,556,919
Length 106
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 83.47
Mean single sequence MFE -27.66
Consensus MFE -18.40
Energy contribution -18.08
Covariance contribution -0.32
Combinations/Pair 1.22
Mean z-score -1.87
Structure conservation index 0.67
SVM decision value 0.28
SVM RNA-class probability 0.666928
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1556813 106 + 22224390
CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCACUUAGUGGAACACUAAGUGAGC-CAAUAUCUUUGACAUUCAAGUUGAAUUCGCCUAUUUGUUC----
...------..((((((((........((((((((...))))))))..(((((((((...))))))))))))-)))....((..((......))..))...))..........---- ( -30.00)
>DroSec_CAF1 19218 104 + 1
CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU--UGGAACACUUGGUGAGC-CAAUUUCUGUGACAUUUAAGCAGAAUUUGCUUAUUUGAUC----
...------....(((((((((.....((((((((...))))))))(((....--.))).......))))))-))).........((..(((((((...)))))))..))...---- ( -29.90)
>DroSim_CAF1 21143 104 + 1
CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU--UGGAACACUUGGUGAGC-CAAUUUCUGUGACAUUUAAGCAGAAUUUGCUCAUUUGAUC----
...------..(((((((((((.....((((((((...))))))))(((....--.))).......))))))-))).((((((.........))))))...))..........---- ( -28.50)
>DroEre_CAF1 20864 115 + 1
CUGCUGCUGCUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU--UGCAACACUAAACAAGCCCGAUAUCCGUGAUAUUUGAGUAGAAUUUGCCUAUUUUAUUAAGU
..((..((((((((((((....))...((((((((...)))))))).......--............)))))(.((((((...)))))).)))))).....)).............. ( -23.80)
>DroYak_CAF1 19629 109 + 1
CUG------CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUUCAAUU--UGCAACACUAAAUACGCCCGAUAUCCGUGGCAUUUAAGUAGAAUUUGCCUAUUUGAUCAAGG
...------...((((((..((.....((((((((...))))))))....)).--.))............(((((.....)).)))..((((((((.......)))))))).)))). ( -26.10)
>consensus
CUG______CUGCUUGGCUUAUGCUUUGUACCCUUUUCGAGGGUAUUCCAAUU__UGGAACACUAAGUGAGC_CAAUAUCUGUGACAUUUAAGUAGAAUUUGCCUAUUUGAUC____
.........(((((((((((((.....((((((((...))))))))((((.....)))).......)))))).((.....)).......)))))))..................... (-18.40 = -18.08 +  -0.32) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:24 2006