| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,199,339 – 14,199,437 |
| Length | 98 |
| Max. P | 0.999752 |
| Location | 14,199,339 – 14,199,437 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 98.37 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -29.16 |
| Energy contribution | -29.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.993480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14199339 98 + 22224390 UGGCAAAAUGGUGGGGUAAUUGCUAAGUGAAGUUUAACUGAAAGUUGUGAACACAGCGGCAGUGGCGCAGUGGAAACUUUGCAGUUAGUUGAUUCCCC ............((((.....((((((..((((((.((((...(((((....))))).((....)).))))..))))))..)..))))).....)))) ( -29.50) >DroSec_CAF1 109242 98 + 1 UGGCAAAAUGGUGGGGUAAUUGCUAAGUGAAGUUUAACUGAAAGUUGUGAACACAGCGGCAGUGGCGCAGUGGAAACUUUGCAGUUAGUUGAUUCCCC ............((((.....((((((..((((((.((((...(((((....))))).((....)).))))..))))))..)..))))).....)))) ( -29.50) >DroSim_CAF1 86946 98 + 1 UGGCAAAAUGGUGGGGUAAUUGCUAAGUGAAGUUUAACUGAAAGUUGUGAACACAGCGGCAGUGGCGCAGUGGAAACUUUGCAGUUAGUUGGUUCCCC ............((((.....((((((..((((((.((((...(((((....))))).((....)).))))..))))))..)..))))).....)))) ( -29.50) >DroEre_CAF1 98287 98 + 1 UGGCAAAAUGGUGGGGUAAUUGCUAAGUGAAGUUUAACUGAAAGUUGUGAGCACAGCGGCGGUGGCGCAGUGGAAACUUUGCAGUUAGUUGAUUCCCC ............((((.....((((((..((((((.((((...(((((....))))).((....)).))))..))))))..)..))))).....)))) ( -29.70) >DroYak_CAF1 100427 98 + 1 UGGCAAAAUGGUGGGGUAAUUGCUAAGUGAAGUUUAACUGAAAGUUGUGAACACAGCGGCAGUGGCGCAGUGGAAACUUUGCAGCUAGUUGAUUCCCC ............((((((((((((..(..((((((.((((...(((((....))))).((....)).))))..))))))..)))).)))))...)))) ( -28.50) >consensus UGGCAAAAUGGUGGGGUAAUUGCUAAGUGAAGUUUAACUGAAAGUUGUGAACACAGCGGCAGUGGCGCAGUGGAAACUUUGCAGUUAGUUGAUUCCCC ............((((.....((((((..((((((.((((...(((((....))))).((....)).))))..))))))..)..))))).....)))) (-29.16 = -29.36 + 0.20)
| Location | 14,199,339 – 14,199,437 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 98.37 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -21.88 |
| Energy contribution | -21.72 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.46 |
| Structure conservation index | 1.01 |
| SVM decision value | 4.00 |
| SVM RNA-class probability | 0.999752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14199339 98 - 22224390 GGGGAAUCAACUAACUGCAAAGUUUCCACUGCGCCACUGCCGCUGUGUUCACAACUUUCAGUUAAACUUCACUUAGCAAUUACCCCACCAUUUUGCCA ((((.......((((((.((((((..(((.(((.......))).))).....))))))))))))..((......))......))))............ ( -21.70) >DroSec_CAF1 109242 98 - 1 GGGGAAUCAACUAACUGCAAAGUUUCCACUGCGCCACUGCCGCUGUGUUCACAACUUUCAGUUAAACUUCACUUAGCAAUUACCCCACCAUUUUGCCA ((((.......((((((.((((((..(((.(((.......))).))).....))))))))))))..((......))......))))............ ( -21.70) >DroSim_CAF1 86946 98 - 1 GGGGAACCAACUAACUGCAAAGUUUCCACUGCGCCACUGCCGCUGUGUUCACAACUUUCAGUUAAACUUCACUUAGCAAUUACCCCACCAUUUUGCCA ((((.......((((((.((((((..(((.(((.......))).))).....))))))))))))..((......))......))))............ ( -21.70) >DroEre_CAF1 98287 98 - 1 GGGGAAUCAACUAACUGCAAAGUUUCCACUGCGCCACCGCCGCUGUGCUCACAACUUUCAGUUAAACUUCACUUAGCAAUUACCCCACCAUUUUGCCA ((((.......((((((.((((((..(((.((((....).))).))).....))))))))))))..((......))......))))............ ( -21.80) >DroYak_CAF1 100427 98 - 1 GGGGAAUCAACUAGCUGCAAAGUUUCCACUGCGCCACUGCCGCUGUGUUCACAACUUUCAGUUAAACUUCACUUAGCAAUUACCCCACCAUUUUGCCA ((((.......((((((.((((((..(((.(((.......))).))).....))))))))))))..((......))......))))............ ( -21.70) >consensus GGGGAAUCAACUAACUGCAAAGUUUCCACUGCGCCACUGCCGCUGUGUUCACAACUUUCAGUUAAACUUCACUUAGCAAUUACCCCACCAUUUUGCCA ((((.......((((((.((((((..(((.((((....).))).))).....))))))))))))..((......))......))))............ (-21.88 = -21.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:23 2006