Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,193,496 – 14,193,589 |
Length | 93 |
Max. P | 0.825007 |
Location | 14,193,496 – 14,193,589 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -28.02 |
Energy contribution | -27.70 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.46 |
Structure conservation index | 0.87 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14193496 93 - 22224390 AAGUUGUCGCUUCAGUUGUAGGGGCAAGCGGAGGCGGAGCCACGCCCCCUUCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU ..(.(((((.....((((.(((((...(((..(((...))).))))))))..))))))))).)((..((((((.......))))))..))... ( -29.20) >DroSec_CAF1 103755 93 - 1 AAGUUGUCGCUUCCGUUGUCGGGGCAAGCGGAGGCGGAGCCACGCCCCCUGCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU ..(.(((((...(((....)))((((.(.((.((((......)))))))))))...))))).)((..((((((.......))))))..))... ( -32.30) >DroSim_CAF1 81334 93 - 1 AAGUUGUCGCUUCAGUUGUCGGGGCAAGCGGAGGCGGAGCCACGCCCCCUGCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU ..............(.((((((((((.(.((.((((......)))))))))))..)))))).)((..((((((.......))))))..))... ( -32.00) >DroEre_CAF1 92888 90 - 1 AAGUUGUCGCCCCAC---UGGGGGCAGGGGGAGGCGGAGCCACGCCCCCAUCCCAACGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU ..(.(((((((((..---..))))).(((((.((((......)))).))..)))...)))).)((..((((((.......))))))..))... ( -36.90) >DroYak_CAF1 94704 90 - 1 AAGUUGUCGCUUCAC---UAGGGGCAAGGGGAGGCGGUGGCACGCCCCCUUCCGGCCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU ..(.(((((((((..---..))))).(((((.((((......)))))))))......)))).)((..((((((.......))))))..))... ( -31.20) >consensus AAGUUGUCGCUUCAGUUGUAGGGGCAAGCGGAGGCGGAGCCACGCCCCCUUCCGACCGACAUCGCUCAUAGUUUUCACUCAACUGUUUGCAUU ..(.(((((((((.......)))))....((.((((......)))).))........)))).)((..((((((.......))))))..))... (-28.02 = -27.70 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:17 2006