Locus 5454

Sequence ID X_DroMel_CAF1
Location 14,191,422 – 14,191,524
Length 102
Max. P 0.562597
window8843

overview

Window 3

Location 14,191,422 – 14,191,524
Length 102
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 82.98
Mean single sequence MFE -20.58
Consensus MFE -15.14
Energy contribution -14.98
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.562597
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14191422 102 + 22224390
CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUU---------UCACAACGAUAUUU--GCUACCGA
.((....((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).))..---------..............--........ ( -14.50)
>DroSec_CAF1 101753 82 + 1
CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUAUGGCCAUGCCA------G-------------------------A
.......((....))(((((((...(((((...((....))...)))))...)))))))..((((((.........))))------)-------------------------) ( -16.80)
>DroSim_CAF1 79278 105 + 1
CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCCA------GAACCACAACGAUAUUU--GCUACCGA
.((....((....))(((((((...(((((...((....))...)))))...)))))))....((((((((((...))))------))))))...........--))...... ( -27.60)
>DroEre_CAF1 90829 104 + 1
CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUGCUGGCCCUGGCCAUGCUGCC-------CCACAAGGACAUUU--GCUACCGC
.((....((....))(((((((...(((((...((....))...)))))...)))))))..((((((....)))).))((((-------......)).))...--))...... ( -20.80)
>DroYak_CAF1 92785 113 + 1
CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUUCCACAAGUUCCACAAGGAUAUUUGUGCUACCGA
.((....((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).))...((((((((((....))).)))))))....... ( -23.20)
>consensus
CGCUCAACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUA______G__CCACAACGAUAUUU__GCUACCGA
.((....((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).))................................... (-15.14 = -14.98 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:16 2006