| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,188,828 – 14,188,938 |
| Length | 110 |
| Max. P | 0.735063 |
| Location | 14,188,828 – 14,188,938 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.89 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -12.36 |
| Energy contribution | -11.84 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.735063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14188828 110 - 22224390 UAAUAAUAGAAAUUCAAUUUGUUUCGAGCACUAAAAGUGUAAUUAUGGGUACAUAUUUGCAAAUGAAUUUCGGACACCUA----------CAUUUAAAUGAGUGUAUGGAAUUGAAAGAU ........((((((((.(((((.....((((.....))))...((((....))))...))))))))))))).....((((----------(((((....))))))).))........... ( -23.50) >DroSec_CAF1 99152 110 - 1 UCAUAAUAUAGAUUCAAUUUGUUUCGAGCACUAAAAGUGCAAUUAUUGGUACAUGUUUGCCAAUAAAUUUCGGACAACUA----------CAUUUAAAUGAGUGUAUCCAAUUGAAAGAU ............(((((((((((.(((((((.....))))..(((((((((......)))))))))...)))))))..((----------(((((....)))))))...))))))).... ( -26.90) >DroSim_CAF1 76652 110 - 1 UCAUAAUAUAGAUUCAAUUUGUUUCGAGCACUAAAAGUGUAAUUAUUGGUACAUGUUUGCCAAUAAAUUUCGAACACCUA----------CAUUUAAAUGAGUGUAUCGAAUUGAAAGAU ............(((((((((.(((((((((.....))))..(((((((((......)))))))))...)))))....((----------(((((....))))))).))))))))).... ( -27.80) >DroEre_CAF1 88199 119 - 1 UCAUAAUAUGGAUGCAAUUAGUUCCAAGCGCUGAAAGUGUAAUUAU-GGUACUUGUUUGCCCAUGAAUUUGGGACACCUACAUAUACUUGUAUUUAAAUAAAUGCAACGUAAUGAAGGGU (((((((.((((.((.....)))))).((((.....)))).)))))-))........((((((......)))).))(((.(((.(((((((((((....)))))))).)))))).))).. ( -29.40) >DroYak_CAF1 90154 109 - 1 UCAUAAUGUGGAUCCAAUUAGUUUCAAGCGCUGAAAGUGUAAUUGU-GGUGAAUGUUUGCCUAUGAAUUUUGGACACCAA----------UAUUAUAGUAAAUGUAUCGAAAUGAAAGAU ..(((((((((.(((((.....((((.((((.....))))......-((..(....)..))..))))..)))))..)).)----------))))))........................ ( -18.50) >consensus UCAUAAUAUAGAUUCAAUUUGUUUCGAGCACUAAAAGUGUAAUUAU_GGUACAUGUUUGCCAAUGAAUUUCGGACACCUA__________CAUUUAAAUGAGUGUAUCGAAUUGAAAGAU ............(((((((...(((((((((.....))))..((((.((((......)))).))))...)))))................(((((....))))).....))))))).... (-12.36 = -11.84 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:14 2006