Locus 5451

Sequence ID X_DroMel_CAF1
Location 14,185,872 – 14,185,964
Length 92
Max. P 0.833484
window8840

overview

Window 0

Location 14,185,872 – 14,185,964
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 84.34
Mean single sequence MFE -24.88
Consensus MFE -18.34
Energy contribution -18.22
Covariance contribution -0.12
Combinations/Pair 1.05
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 0.72
SVM RNA-class probability 0.833484
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14185872 92 + 22224390
ACCAUCCUUGGUCCUUG---CUGGCAGGACCUCUGUAGCCACCG-----CCGCCCACAACCGCAUCAUGUAAAUAAAAAUUAUGAAAAGUUGUCGCGGCA
.........((((((.(---....)))))))............(-----((((..(((((....(((((...........)))))...))))).))))). ( -25.90)
>DroSec_CAF1 96276 92 + 1
AGCAUCCUUGGUCCUUG---CUGGCAGGACCUCUGUAGCCACCG-----CCGCCCACAACCGCAUCAUGUAAAUAAAAAUUAUGAAAAGUUGUCGCGGCA
.((......((((((.(---....)))))))......))....(-----((((..(((((....(((((...........)))))...))))).))))). ( -27.10)
>DroEre_CAF1 85266 100 + 1
ACCAUCCUUGGUCCUUGCUGGCGGCAGGACCUCUGCAGCCACCGCACAACCGCCCACAACCGCAUCAUGUAAAUAAAAAUUAUGAAAAGUUGUCGCGGCA
((((....))))......((((.((((.....)))).))))(((((((((.((........)).(((((...........)))))...))))).)))).. ( -28.90)
>DroYak_CAF1 87201 93 + 1
ACCAUCCUUGGUCCUU--UGCUGGCAGGACCUCUGUAGCCACCG-----CCGCCCACAACCGCAUCAUGUAAAUAAAAAUUAUGAAAAGUUGUCGCGGCA
.........((((((.--.......))))))............(-----((((..(((((....(((((...........)))))...))))).))))). ( -25.30)
>DroAna_CAF1 91055 80 + 1
ACAACACAGGAUCCUGG---C--CCAGGAUCUCC---------------CCCCCAACAACCGCAUCAUGUAAAUAAAAAUUAUGAAAAGUUGUCGCGGCA
........((((((((.---.--.))))))))..---------------..(((.(((((....(((((...........)))))...))))).).)).. ( -17.20)
>consensus
ACCAUCCUUGGUCCUUG___CUGGCAGGACCUCUGUAGCCACCG_____CCGCCCACAACCGCAUCAUGUAAAUAAAAAUUAUGAAAAGUUGUCGCGGCA
.........((((((..........))))))..................((((..(((((....(((((...........)))))...))))).)))).. (-18.34 = -18.22 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:13 2006