| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,180,903 – 14,181,010 |
| Length | 107 |
| Max. P | 0.771804 |
| Location | 14,180,903 – 14,181,010 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.48 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -5.80 |
| Energy contribution | -5.60 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14180903 107 - 22224390 AAUUC-----------AUGU-UUCUGAAAUCAUUUCAUUAUGUACCACAAAGUAUGAAUUGAA-AUUAAAUGAACAUACAUAUCUUCAAAGGAAUACAUUUGGCUCCUGCAUUGAACAUC ..(((-----------((((-((((....(((.(((((..((.....))....))))).))).-......((((.((....)).)))).)))))))......((....))..)))).... ( -12.70) >DroSec_CAF1 91336 98 - 1 UAUCC-----------AUGU-UUCUAAAAGCAUUUCAAUAUGUGCCACAAAGUAUGCAUUGAA------AUGAAC----AUAACUUCAAAGGAAUCCAUUUGGCUCCUGCAUUGAACAUC ..((.-----------((((-.........(((((((((..((((......))))..))))))------)))...----..........((((..((....)).)))))))).))..... ( -19.70) >DroSim_CAF1 68852 103 - 1 AAUCC-----------AUGU-UUCUAAAAUCAUUUCAAUAUGUGCCACAAAGUAUGCAUUGAA-AUGAAAUGAAC----AUAACUUCAAAGGAAUCCAUUUGGCUCCUGCAUUGAACAUC .....-----------((((-((......((((((((((..((((......))))..))))))-))))...))))----))...(((((((((..((....)).))))...))))).... ( -22.50) >DroEre_CAF1 80980 116 - 1 AAUCUAUCAUAAUCUUCUGUAAUCUGAAAUCAUUUCAGUAGGUGCCACAAAUUAUGCGCUGAAAAUCAAAUAGAC----GUCUGUUCAGAGGAAUCCAUUAAGCUCCUGCAUGGAACCCG ............(((((((....(((((.....)))))..(((((..........)))))........(((((..----..)))))))))))).(((((...((....)))))))..... ( -22.50) >DroYak_CAF1 81694 107 - 1 --UGUGGCGUC-----GUGU-UUCUAAAAUUAUUUAGGCAGGUGUCACAAAAUAUGAACUGAAAAUCAAAUAAAC----AUCUGUUUAAAGAAAUCCAUCAGGCUCCUGCAUGCCACAU- --((((((((.-----....-..(((((....)))))(((((.(((........(((........)))..(((((----....))))).............))).))))))))))))).- ( -28.70) >consensus AAUCC___________AUGU_UUCUAAAAUCAUUUCAAUAUGUGCCACAAAGUAUGCAUUGAA_AUCAAAUGAAC____AUAUCUUCAAAGGAAUCCAUUUGGCUCCUGCAUUGAACAUC .................................((((((..((((......))))..)))))).......................................((....)).......... ( -5.80 = -5.60 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:04 2006