Locus 5444

Sequence ID X_DroMel_CAF1
Location 14,179,670 – 14,179,771
Length 101
Max. P 0.555142
window8827

overview

Window 7

Location 14,179,670 – 14,179,771
Length 101
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 89.51
Mean single sequence MFE -24.60
Consensus MFE -21.29
Energy contribution -22.07
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.87
SVM decision value 0.04
SVM RNA-class probability 0.555142
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14179670 101 - 22224390
UUGUUUAGCCACUAACUU-AUUUAAUCUUAGCAGGAGAUAUGACUAAUCAUACUAGCUGGCGAAACAGCCGUCCGCAAACUUUGAAGUUACAAUUCCGACAA
.((((.......(((((.-..((((..((.((.(((..(((((....)))))...((((......))))..))))).))..))))))))).......)))). ( -16.64)
>DroSec_CAF1 90095 102 - 1
UUGUUUAGCCACUAACUAAAUUUUCUCUUAGCAGGAAAUGUGACUGAUCAUGAAAGCUGGCGGAACACCAGUCCGCAAGCUUUGAAGUUACAAUUCCGACAA
..((((((.......)))))).........(..((((.(((((((..(((...(((((.(((((.......))))).))))))))))))))).))))..).. ( -29.50)
>DroSim_CAF1 67624 101 - 1
UUGUUUAGCCACCAAAUU-AUUUUCUCUUAGCAGGAGAUGUGACUGAUCAUGAAAGCUGGCGGAACACCAGUCCGCAAGCUUUGAAGUUACAAUUCCGACAA
.((((..((.........-...........)).((((.(((((((..(((...(((((.(((((.......))))).))))))))))))))).)))))))). ( -27.65)
>consensus
UUGUUUAGCCACUAACUU_AUUUUCUCUUAGCAGGAGAUGUGACUGAUCAUGAAAGCUGGCGGAACACCAGUCCGCAAGCUUUGAAGUUACAAUUCCGACAA
..............................(..((((.(((((((..(((....((((.(((((.......))))).)))).)))))))))).))))..).. (-21.29 = -22.07 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:01 2006