Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,174,350 – 14,174,453 |
Length | 103 |
Max. P | 0.948215 |
Location | 14,174,350 – 14,174,453 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.93 |
Mean single sequence MFE | -42.22 |
Consensus MFE | -31.42 |
Energy contribution | -31.66 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -2.53 |
Structure conservation index | 0.74 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14174350 103 - 22224390 GCUUUCGUUUGGUCGCCGAAUGUCGCUCUUUUUUUUGG------GGGG--GAAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU (((......(.(((((((((((((((.(........)(------((.(--((((..((.((.....))..))..)))))...)))))))))))))))))).)..))).... ( -39.30) >DroSec_CAF1 84865 108 - 1 GCUUUCGUUUGGUCGCCGAAUGUCGCUCUUGUUUUGGGGGGUGGGGGG---AAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU (((......(.((((((((((((((((((......)))(((((((.((---((.........)))).)))((.....))..))))))))))))))))))).)..))).... ( -44.50) >DroSim_CAF1 62770 109 - 1 GCUUUCGUCUGGUCGCCGAAUGUCGCUCUUUUUUUGGGGGUUGGGGGG--CUAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU (((...(((..(((((((((((((((.((......))((((((..(((--(........))((((.....))))))..)).)))))))))))))))))))))).))).... ( -42.70) >DroEre_CAF1 74759 111 - 1 GCUUUUGGUUGGUCGCCGAAUGUCGCUCUUUUUCAGGGGGGGGGGGGAGUGAAACAUCUACAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUUGGCGGCGAUUGGCAGUU (((.(..((((.(((((((((((((((((......)))((((((.((((((.........)))))).)))((.....))...)))))))))))))))))))))..).))). ( -47.20) >DroYak_CAF1 75147 100 - 1 GCUUUCGCUUGGUCGCCGAAUGUCGCUCUUUUUG--------GGGGG---AAAACGUCUACAUUCCGCUCGAAUUUUUCAUACUCGCGGCGUUUGGCGGCGAUUGGCAGUU ......((((.(((((((((((((((.......(--------((.((---((..........)))).)))((.....))......))))))))))))))).)..))).... ( -37.40) >consensus GCUUUCGUUUGGUCGCCGAAUGUCGCUCUUUUUUUGGGGG__GGGGGG__GAAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUU (((......(.(((((((((((((((................((((((...............))).)))((.....))......))))))))))))))).)..))).... (-31.42 = -31.66 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:59 2006