Locus 5440

Sequence ID X_DroMel_CAF1
Location 14,171,445 – 14,171,543
Length 98
Max. P 0.894830
window8822

overview

Window 2

Location 14,171,445 – 14,171,543
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 93.88
Mean single sequence MFE -24.92
Consensus MFE -21.78
Energy contribution -22.26
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.87
SVM decision value 0.98
SVM RNA-class probability 0.894830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14171445 98 + 22224390
CCCCCCUCCUCGUUCUGCCGUAGCCUUCAGCAGCCCCAUCAUCAAGGUCCUUGUGCUCCUUUUGGUCCUCAAACUCCACGGUAUGCCGACAAUGGCAC
...............((((((.((.....))..............((...(((.(..((....))..).)))...))))))))((((......)))). ( -19.00)
>DroSec_CAF1 81973 98 + 1
CCCCCAUCAUCGUUGUGCCGUAGCCUUCAGCGGCAACAUCAUCAAGGUCCUUGUGCUCCUUUUGGUCCUCAAACUCCCCGGCAUGCCGACAAUGGCAC
...((((..(((..((((((..(((......)))...........((...(((.(..((....))..).)))...)).))))))..)))..))))... ( -28.10)
>DroSim_CAF1 59588 98 + 1
CCCCCAUCAUCGUUCUGCCGUAGCCUUCAGCGGCACCAUCAUCAAGGUCCUUGUGCUCCUUUUGGUCCUCAAACUCCCCGGCAUGCCGACAAUGGCAC
...((((..(((...(((((..(((......)))((((.....((((..(....)..)))).))))............)))))...)))..))))... ( -24.60)
>DroEre_CAF1 71970 98 + 1
CCCCCCUCAUCGUUCUGCCGGAGCCCUCAGCAGCCCCAUCAUCAAGGUCCUUGUGCUCCUUUUGGUCCUCAAACUCCCCGGCAGGCCGACAAUGGCAC
....((...(((..((((((((((...(((..(((..........)))..))).))))).((((.....))))......)))))..)))....))... ( -27.30)
>DroYak_CAF1 72260 98 + 1
CCCCCAUCAUCGUACUGCCGUAGCCUUCAUCAGCCCCAUCAUCAAGGUCCUUGUGCUCCUUUUGGUCCUCAAACUCCCCGGCAGGCCGACAAUGGCAC
...((((..(((..((((((..(((((.((.(......).)).)))))..(((.(..((....))..).)))......))))))..)))..))))... ( -25.60)
>consensus
CCCCCAUCAUCGUUCUGCCGUAGCCUUCAGCAGCCCCAUCAUCAAGGUCCUUGUGCUCCUUUUGGUCCUCAAACUCCCCGGCAUGCCGACAAUGGCAC
...((((..(((..((((((..((........))...........((...(((.(..((....))..).)))...)).))))))..)))..))))... (-21.78 = -22.26 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:57 2006