Locus 544

Sequence ID X_DroMel_CAF1
Location 1,554,372 – 1,554,462
Length 90
Max. P 0.846658
window857

overview

Window 7

Location 1,554,372 – 1,554,462
Length 90
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 80.75
Mean single sequence MFE -26.96
Consensus MFE -19.39
Energy contribution -21.58
Covariance contribution 2.19
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.72
SVM decision value 0.77
SVM RNA-class probability 0.846658
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1554372 90 + 22224390
CAUUAACUUUGAAGACUCCUUUGUCAAGCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG
((((.....(((((..(((((((....((((((...(((((..-...))))).))))))..))))))))))))(((......)))..)))) ( -31.30)
>DroSec_CAF1 16777 90 + 1
CAUUAACUUUGGAGACUCCUUUGUCAAGCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG
......((((((.(((......)))..((((((...(((((..-...))))).)))))).))))))....((.(((......)))..)).. ( -31.50)
>DroSim_CAF1 19151 91 + 1
UCUUAACUUUGGAAACUCCUUUGUCAAGCAAAUCAAGGGGCUUUUUUGCCCCCGUUUUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
.(((.((...((.....))...)).)))((((....(((((......)))))...))))................................ ( -14.50)
>DroEre_CAF1 18344 90 + 1
CAUUAACUUUGGAGACUGCUUUGUCCACCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG
......((((((.(((......)))...(((((...(((((..-...))))).)))))..))))))....((.(((......)))..)).. ( -26.00)
>DroYak_CAF1 17076 90 + 1
CAUUAACUUUGGAGACUGCUUUGUCAAGCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG
......((((((.(((......)))..((((((...(((((..-...))))).)))))).))))))....((.(((......)))..)).. ( -31.50)
>consensus
CAUUAACUUUGGAGACUCCUUUGUCAAGCAGAUCAAGGGGCUU_UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG
......((((((.(((......)))..((((((...(((((......))))).)))))).)))))).......(((......)))...... (-19.39 = -21.58 +   2.19) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:22 2006