Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,554,372 – 1,554,462 |
Length | 90 |
Max. P | 0.846658 |
Location | 1,554,372 – 1,554,462 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 80.75 |
Mean single sequence MFE | -26.96 |
Consensus MFE | -19.39 |
Energy contribution | -21.58 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.72 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1554372 90 + 22224390 CAUUAACUUUGAAGACUCCUUUGUCAAGCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG ((((.....(((((..(((((((....((((((...(((((..-...))))).))))))..))))))))))))(((......)))..)))) ( -31.30) >DroSec_CAF1 16777 90 + 1 CAUUAACUUUGGAGACUCCUUUGUCAAGCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG ......((((((.(((......)))..((((((...(((((..-...))))).)))))).))))))....((.(((......)))..)).. ( -31.50) >DroSim_CAF1 19151 91 + 1 UCUUAACUUUGGAAACUCCUUUGUCAAGCAAAUCAAGGGGCUUUUUUGCCCCCGUUUUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .(((.((...((.....))...)).)))((((....(((((......)))))...))))................................ ( -14.50) >DroEre_CAF1 18344 90 + 1 CAUUAACUUUGGAGACUGCUUUGUCCACCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG ......((((((.(((......)))...(((((...(((((..-...))))).)))))..))))))....((.(((......)))..)).. ( -26.00) >DroYak_CAF1 17076 90 + 1 CAUUAACUUUGGAGACUGCUUUGUCAAGCAGAUCAAGGGGCUU-UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG ......((((((.(((......)))..((((((...(((((..-...))))).)))))).))))))....((.(((......)))..)).. ( -31.50) >consensus CAUUAACUUUGGAGACUCCUUUGUCAAGCAGAUCAAGGGGCUU_UUUGCCCCCGUUUGCACCGAAGGACUUCAUGCGUGUCAGCAGCGAUG ......((((((.(((......)))..((((((...(((((......))))).)))))).)))))).......(((......)))...... (-19.39 = -21.58 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:22 2006