Locus 5439

Sequence ID X_DroMel_CAF1
Location 14,170,206 – 14,170,297
Length 91
Max. P 0.772835
window8821

overview

Window 1

Location 14,170,206 – 14,170,297
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 90.69
Mean single sequence MFE -11.02
Consensus MFE -8.82
Energy contribution -8.70
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.80
SVM decision value 0.53
SVM RNA-class probability 0.772835
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14170206 91 - 22224390
ACUCACAGACUCCUUUUCACCAUUCCCCA-AGCCGAAAUAGAUUCAUUAAUCAAAAAAAAAAAAAAAACCAAAGGAGCAAGCUGGAAUAAGC
..((.(((.(((((((......(((....-....)))...((((....))))..................)))))))....)))))...... ( -11.20)
>DroSec_CAF1 80730 86 - 1
ACUCACAGACUCCUUUUCAUCAUUCCCCA-AGCCGAAAUAGAUUCAUUAAUCAAAAAA-----AAAACCCAAAGGAGCAAACUGGAAUAAGC
..((.(((.(((((((......(((....-....)))...((((....))))......-----.......)))))))....)))))...... ( -10.10)
>DroSim_CAF1 58328 86 - 1
ACUCACAGACUCCUUUUCACCAUUCCCCA-AGCCGAAAUAGAUUCAUUAAUCAAAAAA-----AAAACCCAAAGGAGCAAACUGGAAUAAGC
..((.(((.(((((((......(((....-....)))...((((....))))......-----.......)))))))....)))))...... ( -10.10)
>DroEre_CAF1 70749 83 - 1
ACUCACAGACUCCU-UUCACAAUUCCCCAUUGCCGAAAUAGAUUCAUUAAUCAAAA--------AAACCCAAAGGAGCAAACUGGAAUAAGC
..((.(((.(((((-((..((((.....))))........((((....))))....--------......)))))))....)))))...... ( -10.40)
>DroYak_CAF1 71007 83 - 1
ACUCACAGACUCCUUUUCACCAUUUCCCA-AGCCGGAAUAGAUUCAUUAAUCAAAG--------AAACCCAAAGGAGAAAACUGGAAUAAGC
..((.(((.(((((((.......((((..-....))))..((((....))))....--------......)))))))....)))))...... ( -13.30)
>consensus
ACUCACAGACUCCUUUUCACCAUUCCCCA_AGCCGAAAUAGAUUCAUUAAUCAAAAAA_____AAAACCCAAAGGAGCAAACUGGAAUAAGC
..((.(((.(((((((......(((.........)))...((((....))))..................)))))))....)))))...... ( -8.82 =  -8.70 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:56 2006