| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,170,031 – 14,170,146 |
| Length | 115 |
| Max. P | 0.996788 |
| Location | 14,170,031 – 14,170,127 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 93.57 |
| Mean single sequence MFE | -21.48 |
| Consensus MFE | -19.40 |
| Energy contribution | -19.64 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14170031 96 - 22224390 UCUGUGCCGCAAAAGUAAAUCUAUGAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUAAGCCGCAGAUAAAGGAUAAAG-GGUUCUCU ((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))...(((((....-.))))).. ( -21.20) >DroSec_CAF1 80556 93 - 1 UCUGUGCCGCAAAAGUAAAUCUAUGAAUAAGCAAGAGCAAAAGGAGCUCAUGUUUUU---AUAGGUGAGCCGCAGAUAAAGGAUAAAG-GGUUCUCU ((((((.(((....))..(((((((((..((((.((((.......)))).)))))))---))))))..).))))))...(((((....-.))))).. ( -22.50) >DroSim_CAF1 58147 97 - 1 UCUGUGCCGCAAAAGUAAAUCUAUGAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUGAGCCGCAGAUAAAGGAUAAAGGGGUUCUCU ((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))...(((((......))))).. ( -21.40) >DroEre_CAF1 70582 96 - 1 UCUGUGCCGCAAAAGUAAAGCUAUGAAUAUGCAAGAGCAAAAGGAACUCAUGUUUUUAUUAUAGGUGAGACGCAGAUAAAGGACAAAG-GGUUUUUC ((((((((((...(((((((.(((((...(((....)))........))))).)))))))....))).).))))))..((((((....-.)))))). ( -18.00) >DroYak_CAF1 70830 96 - 1 UCUGUGCCGCAAAAGUAAACCUAUAAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUGAGCCGCAGAUAAAGGAUAAAG-GGUUCUGU ((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))...(((((....-.))))).. ( -24.30) >consensus UCUGUGCCGCAAAAGUAAAUCUAUGAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUGAGCCGCAGAUAAAGGAUAAAG_GGUUCUCU ((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))...(((((......))))).. (-19.40 = -19.64 + 0.24)
| Location | 14,170,050 – 14,170,146 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 93.49 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -18.64 |
| Energy contribution | -19.20 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.75 |
| SVM RNA-class probability | 0.996788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14170050 96 - 22224390 UAAAAGGAGUAA--UAGAAGAUCUGUGCCGCAAAAGUAAAUCUAUGAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUAAGCCGCAGAU ............--......(((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))) ( -20.90) >DroSec_CAF1 80575 93 - 1 UAAAAGGAGUAA--UAGAAGAUCUGUGCCGCAAAAGUAAAUCUAUGAAUAAGCAAGAGCAAAAGGAGCUCAUGUUUUU---AUAGGUGAGCCGCAGAU ............--......(((((((.(((....))..(((((((((..((((.((((.......)))).)))))))---))))))..).))))))) ( -22.20) >DroSim_CAF1 58167 96 - 1 UAAAAGGAGUAA--UAGAAGAUCUGUGCCGCAAAAGUAAAUCUAUGAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUGAGCCGCAGAU ............--......(((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))) ( -20.90) >DroEre_CAF1 70601 96 - 1 UAAAAGGAGUAA--UAGAAGAUCUGUGCCGCAAAAGUAAAGCUAUGAAUAUGCAAGAGCAAAAGGAACUCAUGUUUUUAUUAUAGGUGAGACGCAGAU ............--......(((((((((((...(((((((.(((((...(((....)))........))))).)))))))....))).).))))))) ( -17.70) >DroYak_CAF1 70849 98 - 1 UAAAAGGAGUAAAUUCUGUGAUCUGUGCCGCAAAAGUAAACCUAUAAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUGAGCCGCAGAU ....((((.....))))...(((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))) ( -24.30) >consensus UAAAAGGAGUAA__UAGAAGAUCUGUGCCGCAAAAGUAAAUCUAUGAAUAUGCAAGAGCAAAAGGAGCUCAUGUUUUUAUUAUAGGUGAGCCGCAGAU ....................(((((((.(((....))..((((((((....(((.((((.......)))).))).....))))))))..).))))))) (-18.64 = -19.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:55 2006