| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,167,207 – 14,167,297 |
| Length | 90 |
| Max. P | 0.987887 |
| Location | 14,167,207 – 14,167,297 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 72.47 |
| Mean single sequence MFE | -15.94 |
| Consensus MFE | -6.98 |
| Energy contribution | -7.74 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.44 |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.987887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14167207 90 - 22224390 AAAACAUUUUUCCU-UUGGAAAAAAAAA------UUUCAGCCCCCAAAAGGUGCGACAGCCUUAAAUGCCCAAAAAUCAAGGUAUUAGAAGGAUAAA ......(((((((.-..)))))))....------.....((((......)).)).....((((.((((((..........))))))..))))..... ( -15.70) >DroSec_CAF1 77998 95 - 1 AAAA-AUGUUUCCU-UUGCAAAAAAAAACAAAAUUUCCAGCCCCCAAAAGGUGUGACAGCCUUAAAUGCCGAAAAAUCAAGGUAUUAGAAGGAUAAA ....-.....((((-((..............................(((((......))))).((((((..........)))))).)))))).... ( -15.90) >DroSim_CAF1 55586 77 - 1 AAAA-AUGUUUCCU-UUGCAAAAAAAAA------------------AAAGGUGUGACAGCCUUAAAUGCCAAAAAAUCAAGGUAUUAGAAGGAUAAA ....-.....((((-((...........------------------.(((((......))))).((((((..........)))))).)))))).... ( -15.20) >DroEre_CAF1 67577 86 - 1 AAAA-AUGUUCCAGCUCGCAAAA---AA------UGCCAGCCCCCAAAAGGUGUGACAGCCUUUCAGGACAA-GAAUCAAGGCAUUAGGAGGGAAAA ....-.(.((((.(((.(((...---..------))).))).((..((((((......))))))..))....-..............)))).).... ( -18.50) >DroYak_CAF1 68165 69 - 1 AA-------------------AA---AA------UGCCAGCCCCCAAAAGGUGUGACAGCCUUUAAUGCCAAAAAAUCAAGGCAUUAGAAGGAGAAU ..-------------------..---..------((.((..((......))..)).)).(((((((((((..........)))))).)))))..... ( -14.40) >consensus AAAA_AUGUUUCCU_UUGCAAAAAAAAA______UGCCAGCCCCCAAAAGGUGUGACAGCCUUAAAUGCCAAAAAAUCAAGGUAUUAGAAGGAUAAA ...........................................((..(((((......))))).((((((..........))))))....))..... ( -6.98 = -7.74 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:53 2006