Locus 5432

Sequence ID X_DroMel_CAF1
Location 14,164,605 – 14,164,721
Length 116
Max. P 0.605916
window8809

overview

Window 9

Location 14,164,605 – 14,164,721
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 86.87
Mean single sequence MFE -28.04
Consensus MFE -19.12
Energy contribution -20.08
Covariance contribution 0.96
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.605916
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14164605 116 + 22224390
CUGCAUUCGUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUAGCGAAAAGGUUUGAGAGUGCUAUAAAAUGUAGCUCGAAUUAUUUAAAUUUAAUAUGUGUAUGAUUAA
......((((((((...((.(((((((((........))))))))).)).))(((..(((((((..(((........))).)))))))..))).............)))))).... ( -26.20)
>DroSec_CAF1 75213 115 + 1
CUGCAUUCGUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGGAAAAGGUUUGA-AGUGCCAUAAAAUGUAGCUCGAAUUAUUUCAAUUUAAUAAGUGUAUGAUUCA
.((((((..(.(((((((....(((((((........))))))))))))))((((..((((((-.((..(((...)))..))))))))..))))......)..))))))....... ( -29.40)
>DroSim_CAF1 53064 115 + 1
CUGCAUUCGUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGGAAAUGGUUUGA-AGUGCUAUAAAAUGUAACUCAAAUUAUUUCCAUUUAAUUAGUGUAUAAUUCA
.((((((.((..((((((....(((((((........)))))))))))))(((((((((((((-..(((........)))..))))))))))))).....)).))))))....... ( -34.60)
>DroEre_CAF1 64911 115 + 1
CCGCAUUCGUGCAGGGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGAAAAAGGUUUAAAAAUGCAAUAACAUGUAGCUCGAAUUGUUUGCGAAUUAUAAAUGUAUAAUGC-
.((((((((.((.(((((....(((((((........)))))))))))).................((((......)))))).)))).....)))).((((((....))))))..- ( -22.90)
>DroYak_CAF1 65713 115 + 1
CUGCAUUCGUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGGAUGUCUUGGAAAAAGGUUUAAAAAUGCUAUUAAAUGUAGCUCGAAUUAUUUGCAUUUAAUAAGUGUAUAAUGU-
..(((((....((((((((....((((((........))))))))))))))..............((((((((((((((((..........))))))))))).)))))..)))))- ( -27.10)
>consensus
CUGCAUUCGUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGGAAAAGGUUUGA_AGUGCUAUAAAAUGUAGCUCGAAUUAUUUCCAUUUAAUAAGUGUAUAAUUCA
.((((((.((.(((((((....(((((((........)))))))))))))).(((..((((((...(((........)))..))))))..))).......)).))))))....... (-19.12 = -20.08 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:44 2006