| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,158,530 – 14,158,628 |
| Length | 98 |
| Max. P | 0.613110 |
| Location | 14,158,530 – 14,158,628 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.84 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -15.25 |
| Energy contribution | -16.88 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14158530 98 + 22224390 -UUUCACUCGCAGGAAAAGCUGGAAAAUCGGCAAAAGAAGCAGCUGGCAUUGCUGAUUAAAGUGCCAGUCGCACACGCACACACACUUAGAGUAAAUAU -....((((..(((....((((......)))).......((.(((((((((.........))))))))).)).............))).))))...... ( -26.80) >DroSec_CAF1 66624 92 + 1 -UUUCACUCGCAGGAAAAGCUGGAAAAUCGGCAA-AGAAGCAGCUGGCAUUGCUGAUUAAAGUGCCAGUCGCACACCCACACACAC-----GCACAUAU -........((.......((((......))))..-....((.(((((((((.........))))))))).))..............-----))...... ( -24.10) >DroSim_CAF1 44332 92 + 1 -UUUCACUCGCAGGAAAAGCUGGAAAAUCGGCAA-AGAAGCAGCUGGCAUUGCUGAUUAAAGUGCCAGUCGCACACCCACACACAC-----GCACACUC -........((.......((((......))))..-....((.(((((((((.........))))))))).))..............-----))...... ( -24.10) >DroAna_CAF1 62492 81 + 1 CUUAUGCUCG-------AGCAGGAUAACAG---A-AGCAGCAGCUGGCAUUACUGAUUAAAGUGCCAAGAACACACACACAUACAC-----CCUCUC-- .........(-------((.(((.......---.-(((....)))((((((.........))))))....................-----))))))-- ( -14.10) >consensus _UUUCACUCGCAGGAAAAGCUGGAAAAUCGGCAA_AGAAGCAGCUGGCAUUGCUGAUUAAAGUGCCAGUCGCACACCCACACACAC_____GCACACAU .........((.......(((((....))))).......((.(((((((((.........))))))))).))...................))...... (-15.25 = -16.88 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:37 2006