Locus 5428

Sequence ID X_DroMel_CAF1
Location 14,158,328 – 14,158,422
Length 94
Max. P 0.998220
window8800

overview

Window 0

Location 14,158,328 – 14,158,422
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 95.50
Mean single sequence MFE -25.00
Consensus MFE -22.74
Energy contribution -22.66
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -2.12
Structure conservation index 0.91
SVM decision value 3.04
SVM RNA-class probability 0.998220
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14158328 94 + 22224390
CGUGUAUUUACUGACUGGGUCAUAAAAAAGGUGGCAUAAAGCAGCGCCUAGAUGGAAAUCGAGAGAGACAGGCGAGGCUUAUAAAUAUGCGCGA
((((((((((........(((((.......)))))...((((..(((((.(((....)))..(.....))))))..)))).))))))))))... ( -26.30)
>DroSec_CAF1 66423 93 + 1
UAUGCAUGUACUGGCUGGGUCAUAAA-AAGGUGGCAUAAAGCAGCGCCUAGAUGGAAAUCGAGAGAGACAGGCGAGGCUUAUAAAUAUGCGCGA
...((((((.........(((((...-...)))))...((((..(((((.(((....)))..(.....))))))..))))....)))))).... ( -25.80)
>DroSim_CAF1 44131 93 + 1
UAUGCAUGUACUGGCUGGGUCAUAAA-AAGGUGGCAUAAAGCAGCGCCUAGAUGGAAAUCGAGAGAGACAGGCGAGGCUUAUAAAUAUGCGCGA
...((((((.........(((((...-...)))))...((((..(((((.(((....)))..(.....))))))..))))....)))))).... ( -25.80)
>DroEre_CAF1 58484 92 + 1
-ACGUAUGUACUGACUGGGUCAUAAA-AAGGUGGCAUAAAGCAGCGCCUAGAUGGAAAUCGAGAGAGACAGGCGAGGCUUAUAAAUAUGCGCGA
-.(((((((.........(((((...-...)))))...((((..(((((.(((....)))..(.....))))))..))))....)))))))... ( -25.40)
>DroYak_CAF1 59395 92 + 1
-ACAUAUGUACUGACUGGGUCAUAAA-AAGGUGGCAUAAAGCAGCGCCUAGAUGGAAAUCGAGAGAGACAGGCGAGGCUUAUAAAUAUGCGCGA
-...((((.(((.....)))))))..-...(((.((((((((..(((((.(((....)))..(.....))))))..)))).....))))))).. ( -21.70)
>consensus
_AUGUAUGUACUGACUGGGUCAUAAA_AAGGUGGCAUAAAGCAGCGCCUAGAUGGAAAUCGAGAGAGACAGGCGAGGCUUAUAAAUAUGCGCGA
..(((((((.........(((((.......)))))...((((..(((((....(....((....))..))))))..))))....)))))))... (-22.74 = -22.66 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:36 2006