Locus 5427

Sequence ID X_DroMel_CAF1
Location 14,156,329 – 14,156,424
Length 95
Max. P 0.997695
window8799

overview

Window 9

Location 14,156,329 – 14,156,424
Length 95
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 88.85
Mean single sequence MFE -33.26
Consensus MFE -30.32
Energy contribution -29.84
Covariance contribution -0.48
Combinations/Pair 1.08
Mean z-score -2.23
Structure conservation index 0.91
SVM decision value 2.91
SVM RNA-class probability 0.997695
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14156329 95 + 22224390
ACUGUUUAUCUCGGGAAAUUCAAACGCUGCAGGAAAG----GCGGUGAAACGGUCGCGAUCGCGAUCAUCAAAUUGCAAUUGUGGCUGGCCCGUCCUAA
...........((((.........((((((.......----))))))...((((((((((.(((((......))))).)))))))))).))))...... ( -32.20)
>DroSec_CAF1 64422 99 + 1
ACUGUAAAUCUCGAGGAAUUCAAACGCUGCAGGAAAGGCAGGCGGUGAAACGGUCGCGAUCGCGAUCAUCAAAUUGCAAUUGUGGCUGGCUCGUCCUUA
............(((((.......((((((.......))).)))..((..((((((((((.(((((......))))).))))))))))..)).))))). ( -32.60)
>DroSim_CAF1 42159 99 + 1
ACUGUAAAUCUCGAGGAAUUCAAACGCUGCAGGAAAGGCAGGCGGUGAAACGGUCGCGAUCGCGAUCAUCAAAUUGCAAUUGUGGCUGGCUCGUCCUAA
.............((((.......((((((.......))).)))..((..((((((((((.(((((......))))).))))))))))..)).)))).. ( -31.40)
>DroEre_CAF1 56581 95 + 1
ACUGAAAAGCACGAGUAAUUCAAACGCUGCAGGAACG----GCAGUGAAACGGUCGCGAUCGCGAUCGCCAAAUUGCAAUUGUGGCUGGCUCGUCCUGA
.......((.((((((........((((((.......----))))))...((((((((((.(((((......))))).)))))))))))))))).)).. ( -35.60)
>DroYak_CAF1 57425 95 + 1
ACUGAAAAUCACGAGGAAUUCAAACGCUGCGAAAACC----GCGGUGAAACGGUCGCGAUCGCGAUCGCCAAAUUGCAAUUGUGGCUGGCUCGUCCUUA
..........(((((.........(((((((.....)----))))))...((((((((((.(((((......))))).)))))))))).)))))..... ( -34.50)
>consensus
ACUGUAAAUCUCGAGGAAUUCAAACGCUGCAGGAAAG____GCGGUGAAACGGUCGCGAUCGCGAUCAUCAAAUUGCAAUUGUGGCUGGCUCGUCCUAA
...........((((.........((((((...........))))))...((((((((((.(((((......))))).)))))))))).))))...... (-30.32 = -29.84 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:35 2006