Locus 5423

Sequence ID X_DroMel_CAF1
Location 14,147,766 – 14,147,882
Length 116
Max. P 0.676623
window8792

overview

Window 2

Location 14,147,766 – 14,147,882
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.15
Mean single sequence MFE -21.46
Consensus MFE -13.82
Energy contribution -14.82
Covariance contribution 1.00
Combinations/Pair 1.05
Mean z-score -2.18
Structure conservation index 0.64
SVM decision value 0.30
SVM RNA-class probability 0.676623
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14147766 116 - 22224390
GACUAUUACCUUAAUCAAUAAAUUUCCAAUAAUGCAUUGAACAU---CAGAUACCAUACCGAAAUUCUUAGUUUAUGGUGUGUGG-AACAAUGCAAUUUCAAAGCUAACAAAACCAACAA
................................(((((((....(---((.((((((((...............)))))))).)))-..)))))))......................... ( -18.26)
>DroSec_CAF1 51289 116 - 1
GACUAUUACUUUAAUCAAUAAAUUUCCGAUAAUGCAUUGAACAU---CAGAUACCACACCGAAAUUCUCGGUUUAUGGUGUGUGG-AACAAUGCAACUUCAAAGCUAACAAAACCAACAA
...........................((...(((((((....(---((.((((((.(((((.....)))))...)))))).)))-..)))))))...)).................... ( -24.80)
>DroEre_CAF1 51388 112 - 1
GAUUA----CUUAAUUACUAAGCUUCCGAUAAUACAUUGAACAU---CAGAUACCACACCGAAAUUCUUGGUUUAUGGUGAGUGG-AACAAUGCAGUUUCAAAGCAAACAAAACCAACAA
.....----............((((..((.....(((((....(---((..(((((.(((((.....)))))...)))))..)))-..))))).....)).))))............... ( -17.30)
>DroYak_CAF1 51927 120 - 1
GACUAUUAGCUUAAUCAUGAAAUUUCCGAUAAUACAUUGAACAUCAUCAUAUACCACACCGAGAUGCUCGGUUUAUGGUGAGUGAAAACAAUGCAAUUUCAAAGCUAACAAAACCAACAA
.....(((((((.....(((((((..((((.....)))).......((((.(((((.((((((...))))))...))))).)))).........))))))))))))))............ ( -25.50)
>consensus
GACUAUUACCUUAAUCAAUAAAUUUCCGAUAAUACAUUGAACAU___CAGAUACCACACCGAAAUUCUCGGUUUAUGGUGAGUGG_AACAAUGCAAUUUCAAAGCUAACAAAACCAACAA
................................(((((((........((.((((((.(((((.....)))))...)))))).))....)))))))......................... (-13.82 = -14.82 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:29 2006