Locus 5422

Sequence ID X_DroMel_CAF1
Location 14,137,557 – 14,137,657
Length 100
Max. P 0.945174
window8791

overview

Window 1

Location 14,137,557 – 14,137,657
Length 100
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.74
Mean single sequence MFE -23.32
Consensus MFE -20.06
Energy contribution -20.12
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.75
Structure conservation index 0.86
SVM decision value 1.35
SVM RNA-class probability 0.945174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14137557 100 - 22224390
CCAUGUGCGAUGCGAUUCUGCCGCCUGCUGACCAAUUAUGGUCACUUGGCCGCGCCACAUGACCACCUCCGACCACCUU-----------------CAUCCUCCU---CCGACCACCACC
.(((((((((......)).((.(((...((((((....))))))...))).))).))))))..................-----------------.........---............ ( -23.80)
>DroSec_CAF1 47250 116 - 1
CCAUGUGCGAUGCGAUUCUGCCGCCUGCUGACCAAUUAUGGUCACUUGG-CGCGCCACAUGACCACCUCCGUCCACCUCCACCUCCAUCUCCCUUCCAUCCUCCU---CCGACAACGUCU
.((((((((..(((....)))((((...((((((....))))))...))-)))).))))))............................................---..(((...))). ( -25.20)
>DroEre_CAF1 47813 96 - 1
CCAUGUGCGAUGCGAUUCUGCCGCCUGCUGACCAAUUAUGGUCACUUCGCCGCGCCACAUGACCACCUCCAUCCUGC---------------------UGCUCCU---CCGACCACCUAC
.((((((((..((((....((.....))((((((....))))))..))))..)).))))))................---------------------.......---............ ( -22.60)
>DroYak_CAF1 46874 99 - 1
CCAUGUGCGAUGCAAUUCUGCCGCCUGCUGACCAAUUAUGGUCACUUGGACGCGCCACAUGACCACCUCCAUACUCU---------------------ACCUCCAUUCUCUCCCAACUGC
.((((((((..(((....)))((((...((((((....))))))...)).)))).))))))................---------------------...................... ( -21.70)
>consensus
CCAUGUGCGAUGCGAUUCUGCCGCCUGCUGACCAAUUAUGGUCACUUGGCCGCGCCACAUGACCACCUCCAUCCACC_____________________UCCUCCU___CCGACCACCUCC
.((((((((..(((....)))((((...((((((....))))))...)).)))).))))))........................................................... (-20.06 = -20.12 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:28 2006