Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,133,212 – 14,133,317 |
Length | 105 |
Max. P | 0.916806 |
Location | 14,133,212 – 14,133,317 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -24.43 |
Consensus MFE | -12.06 |
Energy contribution | -12.36 |
Covariance contribution | 0.30 |
Combinations/Pair | 1.35 |
Mean z-score | -2.08 |
Structure conservation index | 0.49 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14133212 105 + 22224390 --AGGAUAAAAUUUACCCGAAAUCGGCAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGGCAAAAA----AUAUAUCAAAAUAUGUUGACAAACGUU--------- --..(((((.......(((....)))..((((((....))))))...........)))))..((((.(((((((((....----.............))))))))).))))--------- ( -27.83) >DroSec_CAF1 42868 103 + 1 --AGGAUACAACUUACACGAAAUCGGUAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGG--AAAA----AUAUAUCAAAAUAUGUUGACAAACGGU--------- --..((((.....(((.((....)))))((((((....))))))............))))....((.(((((((--....----((((......)))).))))))).))..--------- ( -23.00) >DroEre_CAF1 43990 102 + 1 --AGGAUGAAAUUUACUCGAAAUCGGCAGCCGCAUCUUUGUGGUGAAAUGCAA-AUUAUCAAGAUGCUUGUUGG--AAAA----ACGUAUCAAAAUACGUUGACAAACGGU--------- --..(((((........((....))(((((((((....))))))....)))..-.)))))..(((((...((..--..))----..)))))......((((....))))..--------- ( -22.00) >DroWil_CAF1 36275 109 + 1 --AGCAUAUGG------CAGCAUCCGUGCCCACAUCUUUGCGGCAA-AUGGAAAAUUAUCAAGACGCAUAUCGU--AAAAACAAACAUGUGAAAAUAUGAAGAUAAAUUGCAUGCCCCAC --.......((------((((((((.((((((......)).)))).-..)))...(((((...(((.....)))--.........(((((....)))))..)))))..))).)))).... ( -26.50) >DroYak_CAF1 42982 105 + 1 CAAGGAUAAAAUUUAAACGAAAUCGGCAGCCGCAUCUUUGUGGCAAAAUGCAAUAUUAUCACGGUGCUUGUCGG--AAAA----AUAUAUCAAAAUAUGUUGACAAACGGU--------- ....(((((........((....))(((((((((....))))))....)))....)))))((.((..(((((((--....----((((......)))).))))))))).))--------- ( -22.80) >consensus __AGGAUAAAAUUUACACGAAAUCGGCAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGG__AAAA____AUAUAUCAAAAUAUGUUGACAAACGGU_________ ....((((.........((....))...((((((....))))))............))))....((.((((((...........((((((....)))))))))))).))........... (-12.06 = -12.36 + 0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:27 2006