Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,548,462 – 1,548,558 |
Length | 96 |
Max. P | 0.820876 |
Location | 1,548,462 – 1,548,558 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.29 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -30.86 |
Energy contribution | -31.46 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.94 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1548462 96 + 22224390 UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCAAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU ...((((((....))))))((((((((((....((.(((((.....))))).))...))))))....(((((.((......))))))).))))... ( -30.60) >DroSec_CAF1 10854 96 + 1 UAUGCACCUUUGGUGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU ...(((((......)))))(((((((((((...((.(((((.....))))).))..)))))))....(((((.((......))))))).))))... ( -33.60) >DroSim_CAF1 12624 96 + 1 UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU ...((((((....))))))(((((((((((...((.(((((.....))))).))..)))))))....(((((.((......))))))).))))... ( -34.10) >DroEre_CAF1 12385 96 + 1 UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUGGAACCGCACUUGCCUGGCCGAUGCAGGAAGGUUUCACAAU ...((((((....))))))(((((((((((.(.((.(((((.....))))).)).))))))))((((.((((.......)))).)))).))))... ( -34.90) >DroYak_CAF1 11083 96 + 1 UAUGCACCUUUGGGGAUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUGGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU ...(((((.....)).)))(((((((((((.(.((.(((((.....))))).)).))))))))....(((((.((......))))))).))))... ( -30.80) >consensus UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU ...(((((......)))))(((((((((((...((.(((((.....))))).))..)))))))....(((((.((......))))))).))))... (-30.86 = -31.46 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:19 2006