Locus 5419

Sequence ID X_DroMel_CAF1
Location 14,129,968 – 14,130,059
Length 91
Max. P 0.740512
window8788

overview

Window 8

Location 14,129,968 – 14,130,059
Length 91
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 76.17
Mean single sequence MFE -23.98
Consensus MFE -14.66
Energy contribution -14.67
Covariance contribution 0.00
Combinations/Pair 1.27
Mean z-score -1.52
Structure conservation index 0.61
SVM decision value 0.45
SVM RNA-class probability 0.740512
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14129968 91 - 22224390
UACAGAUGGGUAUCACC-------U--------AC------AGUCAAGGACAACG--GAAAACUUGUCCAAGGACUGCAUUAAUUAUGCUUAUUUAUUUGAUGCCAUUCGCUCA
....((..(((((((..-------.--------..------((((..((((((.(--.....)))))))...))))((((.....)))).........)))))))..))..... ( -25.50)
>DroPse_CAF1 52562 110 - 1
CACAGAUAAACAUCGGCCCCGAGCUACCGAGCUACCGAGCGAGUCAAGGACGAGUCCAGCCACUUGUC----GACUGCAUUAAUUAUGCUUAUUUAUUUAAUGACAUUUGCUCA
............(((....)))(((....)))....((((((((((..(((((((......)))))))----....((((.....))))............))))..)))))). ( -27.60)
>DroSec_CAF1 39636 91 - 1
UACAGAUGGGUAUCAGC-------U--------AC------AGUCAAGGACAACG--GAAAACUUGUCGAAGGACUGCAUUAAUUAUGCUUAUUUAUUUGAUGCCAUUCGCUCA
....((..((((((((.-------.--------..------((((...(((((.(--.....))))))....))))((((.....))))........))))))))..))..... ( -22.40)
>DroEre_CAF1 40744 91 - 1
UACAGAUAGGCAUCGCC-------U--------CC------CGUCAAGGACAACG--GAGAACUUGUCGAAGGACUGCAUUAAUUAUGCUUAUUUAUUUGAUGCCAUUCGCGCA
....((..((((((..(-------(--------((------.(((...)))...)--))).....(((....))).((((.....))))..........))))))..))..... ( -24.10)
>DroYak_CAF1 38900 91 - 1
UACAGAUGGGUAUCACC-------U--------AC------AGUCAAGGACAACG--GAAAACUUGUCGAAGGACUGCAUUAAUUGUGCUUAUAUAUUUGAUGUCAUUCGCUCA
......(((((......-------.--------.(------((((...(((((.(--.....))))))....)))))((((((.((((....)))).))))))......))))) ( -18.60)
>DroPer_CAF1 47847 102 - 1
CACAGAUAAACAUCGGCCCCGAGCU--------ACCGAGCGAGUCAAGGACGAGUCCAGCCACUUGUC----GACUGCAUUAAUUAUGCUUAUUUAUUUAAUGACAUUUGCUCA
............(((....)))...--------...((((((((((..(((((((......)))))))----....((((.....))))............))))..)))))). ( -25.70)
>consensus
UACAGAUAGGCAUCACC_______U________AC______AGUCAAGGACAACG__GAAAACUUGUCGAAGGACUGCAUUAAUUAUGCUUAUUUAUUUGAUGCCAUUCGCUCA
....((..(((((((..........................((((...(((((..........)))))....))))((((.....)))).........)))))))..))..... (-14.66 = -14.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:26 2006