Locus 5418

Sequence ID X_DroMel_CAF1
Location 14,125,987 – 14,126,093
Length 106
Max. P 0.993060
window8787

overview

Window 7

Location 14,125,987 – 14,126,093
Length 106
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 69.73
Mean single sequence MFE -28.93
Consensus MFE -14.31
Energy contribution -14.53
Covariance contribution 0.23
Combinations/Pair 1.14
Mean z-score -2.63
Structure conservation index 0.49
SVM decision value 2.37
SVM RNA-class probability 0.993060
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14125987 106 - 22224390
UGCGGCCAUGCCAUUACCAUGGCCAACUUGACCUGAGCUUUUUUAGCCAGAUGGCUUCC----AUCGUACAGUUAGCUAACAGAAAA----GGUUUAAACAAUUAAACAAAACA
...(((((((.......)))))))..(((...(((.(((.....)))))).(((((..(----........)..)))))......))----)((((((....))))))...... ( -26.30)
>DroSim_CAF1 33349 113 - 1
UGCGGCCAUGCCAUUACCAUGGCCAACUUGACCCUCGCUU-UUUAGCCAGAUGGCUGCCAGUAAUCGCACAAUUAGCUAACAAAAAAAAAUGGGUUAAACAAUUAAGCAAAACA
((((((((((.......)))))))...(((((((..(((.-..(((((....)))))..)))....((.......))..............)))))))........)))..... ( -32.10)
>DroEre_CAF1 36957 91 - 1
UGCGGCCAUGCCAUGGCGAUGGCCAACUUAAGU-UGGCU-----------------UUCAGUUAUCGCGCACUUGGCUAACAGAA-G----CGGUUGGACAAUUAAACAAAGCA
...((((((((((((((((.(((((((....))-)))))-----------------.)).))))).).)))..))))).......-(----(..(((..........))).)). ( -28.40)
>consensus
UGCGGCCAUGCCAUUACCAUGGCCAACUUGACC_UAGCUU_UUUAGCCAGAUGGCUUCCAGU_AUCGCACAAUUAGCUAACAGAAAA____GGGUUAAACAAUUAAACAAAACA
((((((((((.......)))))))....................((((....))))..........)))............................................. (-14.31 = -14.53 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:25 2006