Locus 5417

Sequence ID X_DroMel_CAF1
Location 14,110,392 – 14,110,483
Length 91
Max. P 0.575300
window8786

overview

Window 6

Location 14,110,392 – 14,110,483
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 83.79
Mean single sequence MFE -35.73
Consensus MFE -24.80
Energy contribution -25.33
Covariance contribution 0.53
Combinations/Pair 1.25
Mean z-score -2.03
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.575300
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14110392 91 + 22224390
AGAUGCAUCAUCAUCAUGGCGGCGCCCUGGGCAGUCCGUCGGCCAUGAUGAGCCAAAUGAUUGGUGGCAGUGGGAAGCUGUUGCCGUUCAA
..........((((((((((((((..((....))..)))).))))))))))......(((.(((..(((((.....)))))..))).))). ( -39.70)
>DroSim_CAF1 21382 91 + 1
AGCUGCAUCAUCACCAUGGCGGCGCCCUGGGCAGUCCGUCGGCCAUGAUGAGCCAAAUGAUUGGUGGCAGUGGCAAGCUGUUGCCGUUCAA
.(((.((((((..((..(((((((((...))).).)))))))..)))))))))....(((.(((..(((((.....)))))..))).))). ( -37.80)
>DroEre_CAF1 22273 91 + 1
AGCAGCAUCAUCACCAUGGCGGCGCCCUCGGCAGUCCGUCGGCCAUGAUGAGCCAAAUGAUUGGGAGCAGUGGGAAGCUGUUGCCGUUCAA
....((.((((((...((((((((((...))).).))))))....))))))))....(((.(((.((((((.....)))))).))).))). ( -34.20)
>DroWil_CAF1 24352 89 + 1
--CAGCAUGUGCACCAUCAUGGGGCUCUGGGCAGUCCAUCGGCCAUGAUGAGCCAAUUGAUUGGCAGCAGUGGGAAACUAUUGCCCUUCAA
--..((....))..((((((..((((.(((.....)))..)))))))))).(((((....))))).(((((((....)))))))....... ( -32.50)
>DroYak_CAF1 20526 91 + 1
AGCAGCAUCAUCACCAUGGCGGCGCACUCGGCAGUCCGUCGGCCAUGAUGAGCCAAAUGAUUGGGGGCAGUGGCAAGUUGCUGCCGUUCAA
.((((((.(.(((.((((((((((.(((....))).)))).)))))).)))((((..((........)).))))..).))))))....... ( -34.40)
>DroMoj_CAF1 18758 88 + 1
---AGCAUCAGCAUCAUCAUGGACCGCUCAGUAGUCCCUCGGCAAUGAUUAGCCAGCUGAUUGGGGGCAGCGGGAAGCUGCUGCCGUUCAA
---...((((((........((((..(...)..))))...(((........))).))))))((((((((((((....)))))))).)))). ( -35.80)
>consensus
AGCAGCAUCAUCACCAUGGCGGCGCCCUCGGCAGUCCGUCGGCCAUGAUGAGCCAAAUGAUUGGGGGCAGUGGGAAGCUGUUGCCGUUCAA
....((.((((((...((((((.((.....))...))))))....))))))))....(((.(((.((((((.....)))))).))).))). (-24.80 = -25.33 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:24 2006