| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,109,513 – 14,109,605 |
| Length | 92 |
| Max. P | 0.551544 |
| Location | 14,109,513 – 14,109,605 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -26.84 |
| Consensus MFE | -16.25 |
| Energy contribution | -17.08 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14109513 92 + 22224390 AUUCGCACCUGGCUGGAGGGGUGCCUUAAAAAGAUUAGGGCCCAAAACGCCAGCGUAAGU-AGCGAUGGGUCUUC------AUUGUGAAUAUAAUA--------UAA ((((((((((........))))))........(((.((((((((...(((..((....))-.))).)))))))).------)))..))))......--------... ( -27.80) >DroPse_CAF1 27090 97 + 1 AUACGCACCUGGCUGGAGGGUUGCCUCAAAAAGAUACGGGCCCAAAAUGCCAGCGUAAGCAUGCGACA--UCUACAAAAUUCUUACGGGUAUCCUC--------UAA ....((.....))((((((((.((((....((((....(((.......))).((....))........--..........))))..))))))))))--------)). ( -23.90) >DroSec_CAF1 19976 92 + 1 AUUCGCACCUGGCUGGAGGGGUGCCUUAAAAAGAUUAGGGCCCAAAAUGCCAGCGUAAGU-CGCGAUGGGUCUUG------AUUGUGAAUAGAAGA--------UAA ((((((((((........))))))........((((((((((((...(((..((....))-.))).)))))))))------)))..))))......--------... ( -30.00) >DroSim_CAF1 20503 92 + 1 AUUCGCACCUGGCUGGAGGGGUGCCUUAAAAAGAUUAGGGCCCAAAAUGCCAGCGUAAGU-UGCGAUGGGUCUUG------AUUGUGAUUAGAAGA--------UAA .(((((((((........))))))........((((((((((((...(((.(((....))-)))).)))))))))------))).......)))..--------... ( -31.40) >DroEre_CAF1 21388 91 + 1 AUUCGCACCUGGCUGGAGGGGUGCCUUAAAAAGAUUCGGGCCCAAAAUGCCAGCGUAAGU-UGCGAUG-CUGUUG------CUUAUGAAUAUAAAA--------UAA ..(((((.((.(((((...((.((((.((.....)).))))))......)))))...)).-))))).(-(....)------)..............--------... ( -25.00) >DroYak_CAF1 19652 99 + 1 AUACGCACCUGGCUGGAGGGGUGCCUUAAAAAGAUUCGUGCCCAAAACGCCAGCGUAAGU-UGCAAUG-CCAUUG------AUUCUGAAUAUAUGAUGUAUUUAUGA ....(((.((.(((((..(((..(.............)..)))......)))))...)).-)))....-......------..(((((((((.....))))))).)) ( -22.92) >consensus AUUCGCACCUGGCUGGAGGGGUGCCUUAAAAAGAUUAGGGCCCAAAAUGCCAGCGUAAGU_UGCGAUG_GUCUUG______AUUGUGAAUAUAAGA________UAA ..((((..((.(((((...((.((((...........))))))......)))))...))...))))......................................... (-16.25 = -17.08 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:23 2006