Locus 5414

Sequence ID X_DroMel_CAF1
Location 14,107,143 – 14,107,257
Length 114
Max. P 0.772529
window8780

overview

Window 0

Location 14,107,143 – 14,107,257
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 73.73
Mean single sequence MFE -19.30
Consensus MFE -1.03
Energy contribution -1.20
Covariance contribution 0.17
Combinations/Pair 1.50
Mean z-score -1.58
Structure conservation index 0.05
SVM decision value 0.53
SVM RNA-class probability 0.772529
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14107143 114 + 22224390
UUAUUCUGUGAUUCUGCAUCUAAUAAUCUAUUUAUUUAUAUAUUUGAGUAAAACA-AUUGAUGCAAAGUGAAGGGAAAUAUACUAAUCUCUUGUACAUCACAUUACAACAACUUU
......((((((..((((((.(((......((((((((......))))))))...-)))))))))..(((((((((..........)))))).)))))))))............. ( -20.40)
>DroSec_CAF1 17719 114 + 1
UUAUUCUGUGAUUCUGCACCUAAUAAUCUAUUUAUUGUCCUAUUUGAGUAAAACA-AUUGAUGGAAAAUGAGGGGAAAUAUACCAAUCUCUUGUAGAUUACAUUACAACAACUUC
......((((((.((((((((.....((((((.(((((..(((....)))..)))-)).)))))).....)))((.......)).......)))))))))))............. ( -22.40)
>DroSim_CAF1 18195 114 + 1
UUAUUCUGUGAUUCUGCACCUAAUAAUCUAUUUAUUGUCAUAUUUGAGUAAAACA-AUUGAUGGAAUAUGAGGGGAAAUAUACCAAUCUCUUGUAGAUUACAUUACAACAACUUC
......((((((.((((((((.(((.((((((.(((((..(((....)))..)))-)).)))))).))).)))((.......)).......)))))))))))............. ( -24.10)
>DroEre_CAF1 19118 109 + 1
UUAUUC-GAGAUUCUGUACCUAAUAAUCUGAAUAUUUCCAUAUUUAAGUUAAACA-AUCGCUGGAAAAUUA---GCGAAAUUC-UCUCUCUUGUACAUUACAUUGCAUUAACUUC
.(((((-.(((((.(.......).))))))))))...........(((((((...-.(((((((....)))---)))).....-.......((((........))))))))))). ( -15.80)
>DroYak_CAF1 17408 93 + 1
UUAUUC-GAGAUUAUAUUUCUUG--------------UCAUAUUUGAGUUAAACAAAUUGGUGGAAAACCAAAGGUGAUAUAC-------CAAUAUCUUACAUUACAAUAACUUC
.....(-((((.......)))))--------------........((((((......(((((.....))))).((((...)))-------).................)))))). ( -13.80)
>consensus
UUAUUCUGUGAUUCUGCACCUAAUAAUCUAUUUAUUGUCAUAUUUGAGUAAAACA_AUUGAUGGAAAAUGAAGGGAAAUAUAC_AAUCUCUUGUACAUUACAUUACAACAACUUC
.......(((((.(((((...................................((......)).........((........)).......)))))))))).............. ( -1.03 =  -1.20 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:19 2006