| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,102,394 – 14,102,496 |
| Length | 102 |
| Max. P | 0.633354 |
| Location | 14,102,394 – 14,102,496 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.48 |
| Mean single sequence MFE | -47.18 |
| Consensus MFE | -30.20 |
| Energy contribution | -31.45 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14102394 102 + 22224390 UCGGCGGACUGGGCGG---------CAUGGGUGGCAUGGGCGGCGGAGCAGC---UGCCGCCGGCAUGGGCAUAUGUGGCGGCAUUAGCAGCACCGUGGGCAGUGCAGCCAUCA ..((((.((((.((.(---------(....)).)).....(.((((.((.((---((((((((.((((....)))))))))))...))).)).)))).).)))).).))).... ( -45.80) >DroGri_CAF1 11185 93 + 1 UGGG---------UGG---------CAUCGGAGGAUUGGGCGGUGGUGCCGC---UUCCGCUGGCAUGGGCAUAUGCGGCGGUAUCAGCAGUACGGUGGGCAGCGCUGCCAUUA ..((---------..(---------(......(((...(((((.....))))---))))(((((((((....))))).((.((((.....)))).))...))))))..)).... ( -36.50) >DroEre_CAF1 12660 111 + 1 UCGGAGGACUGGGCGGCAUGGGCGGCAUGGGUGGCAUGGGCGGUGGAGCAGC---UGCCGCCGGCAUGGGCAUAUGUGGCGGCAUCAGCAGCACCGUGGGCAGUGCCGCCAUCA .(((....)))((((((((..((..((((.....)))).((((((..((.(.---((((((((.((((....)))))))))))).).))..))))))..)).)))))))).... ( -54.10) >DroWil_CAF1 17582 105 + 1 UCGGCGGCAUUGGCGG---------CCUGGGCGGAAUGGGCGGUGGGGCAGCUGCUGCCGCCGGAAUGGGAAUUUGUGGUGGCAUUAGCAGUACGGUGGGCAGUGCGGCAAUUA ...((.((((((.(.(---------(((.(.((.......)).).)))).(((((((((((((.((.......)).)))))))...))))))......).)))))).))..... ( -45.90) >DroYak_CAF1 12792 102 + 1 UCGGUGGACUUGGUGG---------CAUGGGUGGCAUGGGCGGUGGUGCAGC---UGCCGCCGGCAUGGGCAUUUGUGGCGGCAUCAGCAGCACCGUGGGCAGUGCCGCCAUCA ..........((((((---------(((.....((....((((((.(((.(.---((((((((.((........)))))))))).).))).))))))..)).)))))))))... ( -50.50) >DroMoj_CAF1 11440 93 + 1 UGGG---------CGG---------CAUUGGCGGCCUGGGCGGUGGAGCCGC---CGCGGCGGGCAUGGGCAUCUGCGGUGGCAUCAGCAGCACUGUGGGCAGCGCCGCCAUUA ..((---------(((---------(....((.(((((((((.((..(((((---(((((...((....))..))))))))))..)).).)).))..)))).)))))))).... ( -50.30) >consensus UCGG_GGACU_GGCGG_________CAUGGGUGGCAUGGGCGGUGGAGCAGC___UGCCGCCGGCAUGGGCAUAUGUGGCGGCAUCAGCAGCACCGUGGGCAGUGCCGCCAUCA .............................((((((((.(.(.((((.((.((...((((((((.((........))))))))))...)).)).)))).).).)))))))).... (-30.20 = -31.45 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:18 2006