Locus 5412

Sequence ID X_DroMel_CAF1
Location 14,102,065 – 14,102,161
Length 96
Max. P 0.693371
window8778

overview

Window 8

Location 14,102,065 – 14,102,161
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -44.63
Consensus MFE -34.59
Energy contribution -34.40
Covariance contribution -0.19
Combinations/Pair 1.22
Mean z-score -1.69
Structure conservation index 0.78
SVM decision value 0.33
SVM RNA-class probability 0.693371
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14102065 96 - 22224390
UGGCGAGCGCCCAGUCCCAGUCCGUUGCCAGGACUGCUACCCGGCGAUGGAUUGAAGCUAAACUGGCUGGCGGACGCCG---GCUGCGAGUGUCGCAGG
.((((..((((......((((((((((((.((.......)).)))))))))))).((((.....))))))))..)))).---.(((((.....))))). ( -47.50)
>DroPse_CAF1 20191 96 - 1
UGGCGAGCUCCUGG---CAGUCCGUUGCCAGGACUGCUGCCGGGCGAUGGAUUGAAGGUGAACUGGCUGCCGGUCGCCGCCUGCUGCGUGUGCCGCAGG
.((((.((..((((---((((((((((((.((.(....))).))))))))......((....)).))))))))..))))))..(((((.....))))). ( -48.20)
>DroEre_CAF1 12325 96 - 1
UGGCGAGCGCCCAGUCCCAGUCCGUUGCCAGGACUGCUACCCGGCGAUGGAUUGAAGCUGAACUGGCUGGCGGACGCCG---GCUGCGAGUGUCGCAGG
.((((..(((.((((..((((((((((((.((.......)).))))))))))))..))))....(((((((....))))---))))))..))))..... ( -48.90)
>DroYak_CAF1 12451 96 - 1
UGGCGAGCGCCCAGACCCAGUCCGUUGCCAGGACUGCUGCCCGGCGAUGGAUUGAAGCUAAACUGGCUGGCGGACGCCG---GCUGUGAGUGUCGCAGG
.((((..((((......((((((((((((.((.(....))).)))))))))))).((((.....))))))))..)))).---.(((((.....))))). ( -46.40)
>DroMoj_CAF1 11129 87 - 1
UGGCGUGUGCC------CAAUCCGUUGCAAGGACUGCUACCCGGCGAUGGAUUAAAGUUCAAAUGGCUGAUU---UGCU---GCUGCGAGCUACGCAGA
..((((.....------.((((((((((..((.......))..))))))))))..(((((.(..(((.....---.)))---..)..)))))))))... ( -28.60)
>DroPer_CAF1 20282 96 - 1
UGGCGAGCUCCUGG---CAGUCCGUUGCCAGGACUGCUGCCGGGCGAUGGAUUGAAGGUGAACUGGCUGCCGGUCGCCGCCUGCUGCGUGUGCCGCAGG
.((((.((..((((---((((((((((((.((.(....))).))))))))......((....)).))))))))..))))))..(((((.....))))). ( -48.20)
>consensus
UGGCGAGCGCCCAG___CAGUCCGUUGCCAGGACUGCUACCCGGCGAUGGAUUGAAGCUGAACUGGCUGGCGGACGCCG___GCUGCGAGUGUCGCAGG
.((((............((((((((((((.((.......)).))))))))))))..((((.......))))...)))).....(((((.....))))). (-34.59 = -34.40 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:17 2006