Locus 5411

Sequence ID X_DroMel_CAF1
Location 14,101,805 – 14,101,895
Length 90
Max. P 0.909685
window8777

overview

Window 7

Location 14,101,805 – 14,101,895
Length 90
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 94.37
Mean single sequence MFE -27.33
Consensus MFE -21.83
Energy contribution -21.67
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -2.03
Structure conservation index 0.80
SVM decision value 1.07
SVM RNA-class probability 0.909685
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14101805 90 + 22224390
AGUGGUGGCCACCACCAGCACCACCAC---CAUUCGCAUCC---GUAUUCCACGAGCGGCAUCAACACGCCGGCGACGGCCAGCACCAGUUCCUCC
.(((.(((((.......(......)..---...((((...(---((.....)))..((((........)))))))).))))).))).......... ( -25.70)
>DroSec_CAF1 12376 90 + 1
AGUGUUGGCCACCACCAACACCACCAC---CAUUCGCAUCC---GUAUUCCACGAGCGGCAUCAACACGCCGGCGACGGCCAGCACCAGUUCCUCC
.(((((((((..(.((...........---.....((...(---((.....))).))(((........))))).)..))))))))).......... ( -27.10)
>DroSim_CAF1 12882 90 + 1
AGUGUUGGCCACCACCAACACCACCAC---CAUUCGCAUCC---GUAUUCCACGAGCGGCAUCAACACGCCGGCGACGGCCAGCACCAGUUCCUCC
.(((((((((..(.((...........---.....((...(---((.....))).))(((........))))).)..))))))))).......... ( -27.10)
>DroEre_CAF1 12065 90 + 1
AGUGGUGGCCACCAUCAGCACCACCAC---CACUCGCAUCC---GUACUCCACGAGCGGCAUCAACACGCCGGCGACGGCCAGCACCAGUUCCUCC
((((((((...............))))---)))).((..((---((.(.....).)))).........((((....))))..))............ ( -25.66)
>DroYak_CAF1 12173 96 + 1
AGUGGUGGCCACCAUCAGCACCACCACCACCAUUCGCAUCCGUCGUACUCCACGAGCGGCAUCAACACGCCGGCGACGGCCAGCACCAGUUCCUCC
.(((((((............)))))))........((..(((((((.(((...)))((((........)))))))))))...))............ ( -31.10)
>consensus
AGUGGUGGCCACCACCAGCACCACCAC___CAUUCGCAUCC___GUAUUCCACGAGCGGCAUCAACACGCCGGCGACGGCCAGCACCAGUUCCUCC
.(((.(((((......................((((................))))((((........)))).....))))).))).......... (-21.83 = -21.67 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:16 2006