Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,547,933 – 1,548,035 |
Length | 102 |
Max. P | 0.901915 |
Location | 1,547,933 – 1,548,035 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.31 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -13.02 |
Energy contribution | -14.94 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.28 |
Mean z-score | -1.87 |
Structure conservation index | 0.50 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1547933 102 + 22224390 GCUGAGAGAACACGAAUCACUUUCGAAUUUGUUU-UGCAUA---UGUAAAC--------------GUUUUUGGAGUUGGAAGUUGCUUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA ((..(((.(((......((.(((((((..(((((-.((...---.))))))--------------)..))))))).))((...((((((....))))))..))..))).)))..)).... ( -24.20) >DroSec_CAF1 10315 102 + 1 GCUGAGAUAACACGCCUCACUUUCGAAUUUGUAU-UACAUA---UGUAAAC--------------GUUUUUGAAGUUGGAAGGCGCCUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA ((..(((((((..((((((.(((((((..(((.(-(((...---.))))))--------------)..))))))).))..))))(((((....))))).......)))))))..)).... ( -35.30) >DroSim_CAF1 12101 86 + 1 GCUGAGAUAACACGCCUCACUUUCGAAUUUGU----------------------------------UUUUUGAAGUUGGAAGGCGCCUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA ((..(((((((..((((((.(((((((.....----------------------------------..))))))).))..))))(((((....))))).......)))))))..)).... ( -29.80) >DroEre_CAF1 11865 80 + 1 CCUAAGACAGCACGCCUUACUUUCGAAU---------------------------------------UUUUGGAGUUGGAAGGCGCUCUAAACA-GGCAUGUUAAGAUGUUUUGGCUGCA .((((((((...((((((..((((((..---------------------------------------..))))))....)))))).(((.((((-....)))).)))))))))))..... ( -21.10) >DroYak_CAF1 10520 115 + 1 CAUAACACU----GAGAUACUUUCAAAUUUGUAUGCACCUACGUUAUAAACGAUAGAACAUUAUGGUUUUUAGAGUUG-AAGGCGCUCCACACACGGCAUGUCAGGUUAUUUUGGCUGCA .........----(((...(((((((.((((...((..((((((.....))).)))..(.....)))...)))).)))-))))..)))........(((.((((((....))))))))). ( -20.60) >consensus GCUGAGACAACACGCCUCACUUUCGAAUUUGU_U___C_UA___U_UAAAC______________GUUUUUGGAGUUGGAAGGCGCUUUAAACAAGGCAUGUCAAGUUAUUUUGGCUGCA (((((((((((..((((((.(((((((.........................................))))))).))..))))(((((....))))).......))))))))))).... (-13.02 = -14.94 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:18 2006