Locus 5409

Sequence ID X_DroMel_CAF1
Location 14,082,197 – 14,082,295
Length 98
Max. P 0.877680
window8774

overview

Window 4

Location 14,082,197 – 14,082,295
Length 98
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 70.37
Mean single sequence MFE -32.28
Consensus MFE -15.28
Energy contribution -19.36
Covariance contribution 4.08
Combinations/Pair 1.18
Mean z-score -1.89
Structure conservation index 0.47
SVM decision value 0.90
SVM RNA-class probability 0.877680
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14082197 98 + 22224390
ACCUUGGAGCAGUCGGAUCUGGACUCCUUCUUUUCGGUCUUCAUUCAAAAGAUCCAGGAGACGGAAAAU------GUUAAGGGGAAGAAUGAGCUGCAGGAUCA----
..((((.(((..(((..(((...((((((.(((((.((((((..((....))....)))))).))))).------...)))))).))).)))))).))))....---- ( -29.40)
>DroSec_CAF1 4220 98 + 1
AGCUUGGAGCAGUCGGACCUGGACUCCUUCUUUUCGGUCUUCAUUCGAAAGAUCCAGGAGACGCAAUCU------GACAAGGGGAAGAAGGAGCUGCAGGAUCA----
.((.....)).....((((((.((((((((((..(.((((((..((....))....)))))).....((------....)))..))))))))).).)))).)).---- ( -37.10)
>DroSim_CAF1 4759 98 + 1
AGCUUGGAGCAGUCGGACCUGGACUCCUUCUUUUCGGUCUUCAUUCGAAAGAUCCAGGAGACGCAAUCU------GACAAGGGGAAGAAGGAGCUGCAGGAUCA----
.((.....)).....((((((.((((((((((..(.((((((..((....))....)))))).....((------....)))..))))))))).).)))).)).---- ( -37.10)
>DroWil_CAF1 2836 96 + 1
ACCCUGGAAGAAUCGGAUUUGGAAGCGUUCUUUGAAAUAUACCUCCAGCAGGAUGAGGUGACCCUUAUGUU------------UCAGCAGAAGCAGCAGGAAAAGUUA
..((((((....))..........((.(((((((((((((...(((....))).((((....)))))))))------------)))).))))))..))))........ ( -21.60)
>DroYak_CAF1 4579 104 + 1
AGUUUGGAGCAGUCGGACAUAGAGUCCUUCUACGCGGUCUACAUUCAAAAGAUCCAGGAGACGGAAACGUUGACAGAGGAGGGGAAGACGGCGCUGCAGGCUCA----
((((((.(((((..((((.....))))..))..((.((((...(((......(((.(..((((....))))..)...)))..))))))).))))).))))))..---- ( -36.20)
>consensus
AGCUUGGAGCAGUCGGACCUGGACUCCUUCUUUUCGGUCUUCAUUCAAAAGAUCCAGGAGACGCAAACU______GACAAGGGGAAGAAGGAGCUGCAGGAUCA____
..((((.(((.(((.......)))(((((((((((((((((.......))))))..(....)...................)))))))))))))).))))........ (-15.28 = -19.36 +   4.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:13 2006