| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,080,845 – 14,080,944 |
| Length | 99 |
| Max. P | 0.597272 |
| Location | 14,080,845 – 14,080,944 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.04 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -18.03 |
| Energy contribution | -19.69 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14080845 99 + 22224390 CUGAUUUUUUUUUUUUGCU---------------UUACAUGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUAACU (((((..............---------------..........))))).(((((....(((((((((....))).))))))((((((((....))))).))))))))...... ( -17.96) >DroSec_CAF1 2977 109 + 1 -----UUUAUCGUUUUGCUUUGUACAAAUCACCUUCAGAAGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUCCCU -----...........(((.(((((...((.......)).)))))..)))(((((....(((((((((....))).))))))((((((((....))))).))))))))...... ( -23.60) >DroSim_CAF1 2847 114 + 1 UUUAUUUUUUCUUUUUGCUUUGUACAAAUCACCUUCAGAAGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUCCCU ................(((.(((((...((.......)).)))))..)))(((((....(((((((((....))).))))))((((((((....))))).))))))))...... ( -23.60) >consensus _U_AUUUUUUCUUUUUGCUUUGUACAAAUCACCUUCAGAAGUACAUCAGCGGUGCAUUUCCAUUGUUUGUCCGAAUUAAUGGUGGCGUUAUUUUUAACGAUCAGCACUAUCCCU ................(((.(((((...............)))))..)))(((((....(((((((((....))).))))))((((((((....))))).))))))))...... (-18.03 = -19.69 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:12 2006