| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,079,877 – 14,079,976 |
| Length | 99 |
| Max. P | 0.721003 |
| Location | 14,079,877 – 14,079,976 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 84.27 |
| Mean single sequence MFE | -42.47 |
| Consensus MFE | -31.05 |
| Energy contribution | -32.47 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14079877 99 + 22224390 ACGGGCAGUGCCUCCAGUUCGCUGCACUACGUCAACGAGCUGCUGCCCAACG---GUGGCGGUGAGCACCGCAAGAAGCAGCGACGCCAUCGUCACAAGGAG ..((((((......(((((((.(((.....).)).)))))))))))))....---(((((((((.((..(((........)))..)))))))))))...... ( -41.30) >DroSec_CAF1 2078 99 + 1 ACGGGCAGUGCCUCCAGCUCGCUGCACUACGUGAACGAGCUGCUGCCCACCG---GUGGCGGUGAGCAUCGCAAGAAACAGCGACGCCAUCGCCACAAGGAA ..((((((......(((((((...(((...)))..))))))))))))).((.---(((((((((.((.((((........)))).)))))))))))..)).. ( -51.20) >DroSim_CAF1 1928 99 + 1 ACGGGCAGUGCCUCCAGCUCGCUGCACUACGUGAACGAGCUGCUGCCCAGCG---GUGGCGGUGAGCAUCGCAAGAAGCAGCGACGCCAUCGCCACAAGGAG ..((((((......(((((((...(((...)))..)))))))))))))....---(((((((((.((.((((........)))).)))))))))))...... ( -49.70) >DroEre_CAF1 2225 99 + 1 ACGGGCAGUGCCUCUAGCUCGCUGCACUAUGUGAACGAGCUGCUGUCGACUG---GUGGUGGUGAGCACCGCAAGAAGCAGCGACGCCAUCGCCACAAGGAG ...((((((......((((((...(((...)))..))))))))))))..((.---(((((((((.((..(((........)))..))))))))))).))... ( -39.60) >DroYak_CAF1 2158 102 + 1 ACGGGCAGUGCCUCCAGUUCGCUGCACUAUGUGAACGAGCUGCUGCCGACUGCUGGCGGUGGUGAGCAUCGCAAGAAGCAGCGACGCCAUCGCCACAAGGAG ...((((((..(((..((((((........)))))))))..))))))..((..(((((((((((.((.((....)).)).....)))))))))))..))... ( -46.50) >DroPer_CAF1 1860 87 + 1 AGCGGCAGUGCCUCGAGCAGUCUGCACUACGUUAACGAACUGCUGCCAAAUG---------GAGAGCACCGCAAGAAACAGCGCCGCC------ACAGACAG .(((((.(((((((.((((((.((...........)).))))))..(....)---------))).)))).((........))))))).------........ ( -26.50) >consensus ACGGGCAGUGCCUCCAGCUCGCUGCACUACGUGAACGAGCUGCUGCCCACCG___GUGGCGGUGAGCACCGCAAGAAGCAGCGACGCCAUCGCCACAAGGAG ...((((((......((((((...(((...)))..))))))))))))........(((((((((.((..(((........)))..)))))))))))...... (-31.05 = -32.47 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:11 2006