Locus 5406

Sequence ID X_DroMel_CAF1
Location 14,073,761 – 14,073,873
Length 112
Max. P 0.843302
window8771

overview

Window 1

Location 14,073,761 – 14,073,873
Length 112
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 90.31
Mean single sequence MFE -51.53
Consensus MFE -42.88
Energy contribution -44.43
Covariance contribution 1.56
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 0.83
SVM decision value 0.76
SVM RNA-class probability 0.843302
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14073761 112 + 22224390
AAGAAGCAGGCAGAGCAGGGCGCCGCUCUGGUGGCCCUGCUCCAUCUUGGCCAGCUGGAGGCGGAGGUUCUGCGCGACAAUGGCAGCCUGCUCAACUGAGCAGCAAAGUUCC
..((.((((((.((((((((((((.....))).))))))))).......((((..((..(((((.....)))).)..)).)))).))))))))....((((......)))). ( -53.70)
>DroSec_CAF1 1915 112 + 1
AAGAAGCAAGCGGAGCAAGGCGCCGCUCUGGUGGCCCUGCUCCAUCUCGGCCACCUAGAGGCGGAGGUUCUGCGCGACAAUGGCAGCCUGCUCAACUGAGCAGCGAAGUUCC
..(((((..((((((((.((.(((((....)))))))))))))(((((.(((.......))).)))))...))((.......)).))((((((....)))))).....))). ( -48.60)
>DroSim_CAF1 1409 112 + 1
AAGAAGCAAGCGGAGCAGGGCGCCGCUCUGGUGGCCCUGCUCCAUCUCGGCCAGCUAGAGGCGGAGGUUCUGCGCGACAAUGGCAGCCUGCUCAACUGAGCAGCGAAGUUCC
..(((((..(((((((((((((((.....))).))))))))))(((((.(((.......))).)))))...))((.......)).))((((((....)))))).....))). ( -51.70)
>DroEre_CAF1 1455 107 + 1
AAGAAGCAGGCGGAGCAGGGCGCCGCUCUGGUGGCCCUGCUCCAUCUCGGCCAGCUGGAGGCGGAGGUUCUGCGCGACAAUGGCAGCCUGCUCAACUGA--AGC---GCUCC
..((.(((((((((((((((((((.....))).))))))))))......((((..((..(((((.....)))).)..)).)))).))))))))......--...---..... ( -55.60)
>DroYak_CAF1 1418 107 + 1
AAGAAGCAGGCGGAGCAGGGCGCCGCUCUGGUGGCCCUGCUCCAUCUCGGCCAGCUGGAGGCGGAGGUUCUGCGCGACAAUGGCAGCCUGCUUAACUGA--AGC---GUUCC
...(((((((((((((((((((((.....))).))))))))))......((((..((..(((((.....)))).)..)).)))).))))))))......--...---..... ( -56.60)
>DroAna_CAF1 1468 109 + 1
AAGAAGCAGGCGGAGCAGGGCGCCGCUCUGGUGGCCCUCCUGCAUCUCGGCCAGCUGGAGGAGGAAACGUUACGCGACAAUGGCAGCCUCAUCAACUGACCAGCG---CCCC
.....((.(((.((((((((.(((((....))))).).)))))...)).))).(((((..((((...((((.......))))....)))).((....))))))))---)... ( -43.00)
>consensus
AAGAAGCAGGCGGAGCAGGGCGCCGCUCUGGUGGCCCUGCUCCAUCUCGGCCAGCUGGAGGCGGAGGUUCUGCGCGACAAUGGCAGCCUGCUCAACUGAGCAGCG__GUUCC
..((.(((((((((((((((((((.....))).))))))))))......((((..((..(((((.....)))).)..)).)))).))))))))................... (-42.88 = -44.43 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:10 2006