| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,068,526 – 14,068,624 |
| Length | 98 |
| Max. P | 0.579027 |
| Location | 14,068,526 – 14,068,624 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.13 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14068526 98 - 22224390 -----GGAAAUGGCGUAAUUGAAACCGGAAAUGGGACAAUC--CAGUCCUUGUAGCUACA-----------CUAAUUAUGCCUAGUACAAUGCUAAGUGUACUUUUAGAUCCCACA -----(((...((((((((((.....((....(((((....--..))))).....))...-----------.)))))))))).((((((........))))))......))).... ( -24.90) >DroSec_CAF1 7958 94 - 1 -----GGAAAUGGC------GAAACCGGAAGUGGGACAAUCCCCAGUCCUUACAGCUACU-----------CUAAUUAUGCCUAGUACAAUGCUAAGUGUACUUUUAGAUCCUACA -----(((..((((------......(((..((((......)))).))).....)))).(-----------((((.(((((.((((.....)))).)))))...)))))))).... ( -24.00) >DroYak_CAF1 8616 108 - 1 GAACCGGAAACGGC------GAAACCGAGAGGGGGACAAUC--CAGUCCUAGUAGCUAUUAUACCUAGUAGCUAAUUAUACCUAGUACAAUGCUAAGUGUACUUUUAGAUCACACA ...(((....))).------....((....))(((((....--..)))))..(((((((((....)))))))))..(((((.((((.....)))).)))))............... ( -31.30) >consensus _____GGAAAUGGC______GAAACCGGAAGUGGGACAAUC__CAGUCCUUGUAGCUACU___________CUAAUUAUGCCUAGUACAAUGCUAAGUGUACUUUUAGAUCCCACA .....(((..(((...........))).....(((((........))))).....................((((.(((((.((((.....)))).)))))...)))).))).... (-14.24 = -14.13 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:09 2006