| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,053,220 – 14,053,310 |
| Length | 90 |
| Max. P | 0.869338 |
| Location | 14,053,220 – 14,053,310 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -15.27 |
| Energy contribution | -14.67 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14053220 90 - 22224390 -------------CAUAUAAAUUGCAA-AUGUACGACCGUUUGUAUGUUGGU--AAUUAAAAAUGCCGCAGAUGCAAUUUACCGUGCGUUUGCAUUGAGGCA--AAAG -------------.........(((((-(((((((.....((((((.(((((--(........))))).).)))))).....))))))))))))........--.... ( -26.50) >DroSec_CAF1 21743 90 - 1 -------------CAUAUAAAUUGCUA-AUGUACGACCGUUUGUAUGUUGGU--AAUUAAAAAUGCCGCAGAUGCAAUUUACCGAGCGUUUGCAUUGAGGCA--AAAG -------------......((((((((-((((((((....))))))))))))--)))).....((((((((((((..........)))))))).....))))--.... ( -28.20) >DroEre_CAF1 22106 90 - 1 -------------CAUAUAAAUUGCAA-AUGUACGACCGUUUGUAUGUUGGU--AAUUAAAAAUGCCGCAGAUGCAAUUUACCGAGCGUUUGCAUUGGGGCA--AAGG -------------......((((((.(-((((((((....))))))))).))--)))).....((((.(((.(((((............)))))))).))))--.... ( -24.30) >DroYak_CAF1 21643 90 - 1 -------------CAUAUAAAUUGCGA-AUGUACGAGCGUUUGUAUGUUGGU--AAUUAAAAAUGCCGCAAAUGCAAUUUACCGAGCGUUUGCAUUGAGGCA--AAAG -------------......((((((.(-((((((((....))))))))).))--)))).....((((((((((((..........)))))))).....))))--.... ( -25.60) >DroAna_CAF1 17917 94 - 1 -------------GACAUAAAUUGCAA-GUGUGCGGAUGGUUGUAUGCUGGCGAAAUUAAAAAUUCCGCAAAUGCAAUUUACAGAGCGUUUGCACUGAGGCGAAAAGG -------------........((((..-..(((((((((.((((((((..(((.(((.....))).)))....)))...)))))..)))))))))....))))..... ( -26.00) >DroPer_CAF1 17134 102 - 1 GCAUGUGUGUGUGCAUAUGUAUUUCAAUAUGUAUGA--AUUUGUAUGUUGCC--AAUUAAAAAUGCCGAAAAUGCAAUUUACCGUACAUUUGCAUUGAGGCG--AGAA ((((((((....))))))))....(((((((((...--...)))))))))..--.........((((...(((((((............)))))))..))))--.... ( -24.20) >consensus _____________CAUAUAAAUUGCAA_AUGUACGACCGUUUGUAUGUUGGU__AAUUAAAAAUGCCGCAAAUGCAAUUUACCGAGCGUUUGCAUUGAGGCA__AAAG .......................((...((((((((....))))))))..))...........((((...(((((((............)))))))..))))...... (-15.27 = -14.67 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:06 2006