| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,047,765 – 14,047,874 |
| Length | 109 |
| Max. P | 0.749199 |
| Location | 14,047,765 – 14,047,874 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.87 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -24.16 |
| Energy contribution | -25.03 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14047765 109 + 22224390 AUGGAUCGAUAGAGGGCGGUGAAAAUUUUGGCGGGGGUGUGGGGAAAACCGGGGUUAGACACGACGAGUUGGAAACUUUUCGUAGUGACGUAGUCCUCAAGUUUGAUUU ..(((((((..(((((((((....)))...(((.((.(.(((......))).).))...(((.(((((..(....)..))))).))).))).))))))....))))))) ( -31.30) >DroSec_CAF1 16140 103 + 1 AUGGAUCGAUAGAGGGCGGUGAAAAUUUUGGCGGGGG------GAAAACCGGGGUUAGACACGACGAGUUGGAAACUUUUCGUAGUGACGUAGUCCUCAAGUUUGAUUU ..(((((((..((((((..((.....((((((...((------.....))...))))))(((.(((((..(....)..))))).))).))..))))))....))))))) ( -30.80) >DroSim_CAF1 16736 107 + 1 AUGGAUCGAUAGAGGGCGGGGAAAAUUUUGGCGGGGG--GAGGGAAAACCGGGGUUAGACACGACGAGUUGGAAACUUUUCGUAGUGACGUAGUCCUCAAGUUUGAUUU ..(((((((..((((((.........((((((...((--.........))...))))))(((.(((((..(....)..))))).))).....))))))....))))))) ( -29.30) >DroEre_CAF1 16700 90 + 1 AUGGAUCGAUAGAGGGCGGGGAAAAUUGUG-------------------GGGGGUGAGACACGUCGAGGCGGAAACUUUUCGUAGUGACGUAGUCCCCAAGUUCGAUUU ..(((((((......((((......))))(-------------------((((.(.....((((((..(((((.....)))))..))))))).)))))....))))))) ( -27.00) >consensus AUGGAUCGAUAGAGGGCGGGGAAAAUUUUGGCGGGGG______GAAAACCGGGGUUAGACACGACGAGUUGGAAACUUUUCGUAGUGACGUAGUCCUCAAGUUUGAUUU ..(((((((..((((((......(((..(((.................)))..)))...(((.(((((..(....)..))))).))).....))))))....))))))) (-24.16 = -25.03 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:03 2006