Locus 5399

Sequence ID X_DroMel_CAF1
Location 14,046,024 – 14,046,130
Length 106
Max. P 0.998125
window8762

overview

Window 2

Location 14,046,024 – 14,046,130
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.41
Mean single sequence MFE -25.52
Consensus MFE -12.92
Energy contribution -13.60
Covariance contribution 0.68
Combinations/Pair 1.13
Mean z-score -2.56
Structure conservation index 0.51
SVM decision value 3.01
SVM RNA-class probability 0.998125
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14046024 106 - 22224390
GUUGGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGCUUCAAAAAGCAGAA--------------AUUAGUAUUUCCUAUCCGAUUAGUU
((((((.......((((((......((((((((((((........)))))))))))).))))))(((((....)))))(((--------------((....)))))...))))))..... ( -23.60)
>DroSec_CAF1 14794 120 - 1
GUUGGAAUUCAAUAACUAUCCUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGGUUCAAAAAGCACGAUUAUAUCUUUAGGAAUUAGUAAUUCCUAUCCGAUUAGUG
((((((.......(((((..(((..((((((((((((........))))))))))))..)))..))))).....................(((((((.....)))))))))))))..... ( -30.10)
>DroSim_CAF1 15153 103 - 1
GUUGGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGGUUCAAAAAUCACGAUUAAAUCUUU-----------------AUCCGAUUAGUG
((((((.......(((((..(((..((((((((((((........))))))))))))..)))..)))))..........(((...)))...-----------------.))))))..... ( -19.70)
>DroEre_CAF1 14993 107 - 1
GUCCGAAUUCAAUAACUAUCUUUGUAGUUGCGGACAGA-CUUUUCUGAACUGCAAUUUAUAGUUGAGUUUGGAAAACGUGAUUAUAACA------AUAGUAAAUUACU-----AUUAAU-
.((((((((((...(((((..((((((((.((((....-....))))))))))))...)))))))))))))))...............(------((((((...))))-----)))...- ( -29.80)
>DroYak_CAF1 14794 98 - 1
GUCCGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGAAUUUUUCUAAACUGCAAUUAACAGCUUAAUUCGGAGAACAUGAUUA----A------AUUGUUAUUUUC-----------U-
.((((((((.....((((...))))((((((((((((........))))))))))))........))))))))(((.(((((..----.------...))))).)))-----------.- ( -24.40)
>consensus
GUUGGAAUUCAAUAACUAUCUUAGUAGUUGCGGUUUGCAUUUUCCUAAACUGCAAUUUAUAGUUUGGUUCAAAAAACACGAUUA_A_CA______AUUAGUAAUUCCUAUCCGAUUAGU_
....(((((....((((((......((((((((((((........)))))))))))).)))))).))))).................................................. (-12.92 = -13.60 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:02 2006