Locus 5397

Sequence ID X_DroMel_CAF1
Location 14,044,214 – 14,044,325
Length 111
Max. P 0.975335
window8757

overview

Window 7

Location 14,044,214 – 14,044,325
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.46
Mean single sequence MFE -22.76
Consensus MFE -10.72
Energy contribution -12.48
Covariance contribution 1.76
Combinations/Pair 1.23
Mean z-score -2.45
Structure conservation index 0.47
SVM decision value 1.75
SVM RNA-class probability 0.975335
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14044214 111 - 22224390
AGUGCAGACAUUACGGAAAUGCGAGUA-AAUCUAUACAUAUUUAUACUAUUCUUAUGAGAUUUCAUAGUGUGAAAUUGUAUGGAUAUAGAU--------AUAGAGUAUAAACAAAAUUAA
.((((.....((((..........)))-)(((((((((..(((((((((((((....)))....))))))))))..)))))))))......--------.....))))............ ( -21.60)
>DroSec_CAF1 12887 107 - 1
AGUGCAAACAUUACGGAAAUGCGAGUA-AAUCUAU----AUUUAUACUAUUUUUAUGAGCUUUCAUAGUGAGAAAUAGUAUUGAUAUAGAU--------AUGGAGUAUAAACAAAAUUAA
.((((.....((((..........)))-)((((((----(((.(((((((((((....(((.....))).))))))))))).)))))))))--------.....))))............ ( -24.00)
>DroSim_CAF1 13291 107 - 1
AGUGCAAACAUUACGGAAAUGCGAGUA-AAUCUAU----AUUUAUACUAUUUUUAUGAGCUUUCAUAGUUAGAAGUAGUAUGGAUAUAGAU--------AUAGAGUAUAAACAAAAUUAA
.((((.....((((..........)))-)((((((----((((((((((((((((...(((.....)))))))))))))))))))))))))--------.....))))............ ( -26.80)
>DroEre_CAF1 13151 116 - 1
AGUGCAAACAUUACGAAAAUGCGAACAAAAUCUAU----AUUUACACAAUUUUUCAGUGCUAUUAAACUGGGAAAUAGUAUAGAUAUUGAUAGAUCUGAAUAGAGCAUGUACAAAAAUAA
.((((...(.....)...((((.......(((.((----(((((.((.((((..((((........))))..)))).)).))))))).)))...(((....)))))))))))........ ( -23.90)
>DroYak_CAF1 12883 116 - 1
AGUGCAAACGUUACGAGAAUGCGAACAAAAUCUAU----AUUUAUAUUUGUUUCCUGAGUUAUAACACUGAUAAAUAGUAUGGAUAUAAAUAGAUUCGAAUAGAGCAUGUACAAUUAUUU
.(((((...(((.((......)))))..(((((((----..(((((((..(...(((..((((.......)))).))).)..))))))))))))))...........)))))........ ( -17.50)
>consensus
AGUGCAAACAUUACGGAAAUGCGAGUA_AAUCUAU____AUUUAUACUAUUUUUAUGAGCUUUCAUAGUGAGAAAUAGUAUGGAUAUAGAU________AUAGAGUAUAAACAAAAUUAA
.((((...((((.....))))........((((((....((((((((((((((((..............)))))))))))))))))))))).............))))............ (-10.72 = -12.48 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:58 2006