Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,027,733 – 14,027,840 |
Length | 107 |
Max. P | 0.799842 |
Location | 14,027,733 – 14,027,840 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -32.91 |
Consensus MFE | -22.40 |
Energy contribution | -22.97 |
Covariance contribution | 0.57 |
Combinations/Pair | 1.14 |
Mean z-score | -2.64 |
Structure conservation index | 0.68 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14027733 107 + 22224390 UUA------AAUGGAGAGGGCAUAGCUACUAUGGAGUCGGAUUAACCAGAUUUCUUUAGCUAUAAUUUUGAUGGUUAGGGAAUCCUAUCUAGAGAUGCCACAUCCCCAUAUUC------- ...------.((((.((.(((((..(((....((((((((.....)).)))((((((((((((.......)))))))))))))))....)))..)))))...)).))))....------- ( -32.10) >DroSec_CAF1 54366 120 + 1 UUAAUCCAAAAUGGAGAGGGCAUAGCUCCUAUGGAAUUGGGUUAACCCGAUUUCUUUAGACAUCAUUUUGGUGGUUAGGGAAUCCUAUCUAGAGAUACUACAUCCCCAUAUUCCUAGCAA .....(((((((((...((((...))))(((.(((((((((....)))))))))..)))...)))))))))..(((((((((((((....)).)))..............)))))))).. ( -33.03) >DroSim_CAF1 54137 120 + 1 UUAAUCCAAAAUGGAGAGGGCAUAGCUCCUAUGGAAUCGGGUUAACCCGAUUUCUUUAGAUAUCAUUUUGAUGGUAAGGGAAUCCUAUCUAGAGAUACUACAUCCCCAUAUUCCUGGCAA .....(((....((((.((((...)))).((((((((((((....)))))))((((((((((((((....))))))(((....))).))))))))..........))))))))))))... ( -33.60) >consensus UUAAUCCAAAAUGGAGAGGGCAUAGCUCCUAUGGAAUCGGGUUAACCCGAUUUCUUUAGAUAUCAUUUUGAUGGUUAGGGAAUCCUAUCUAGAGAUACUACAUCCCCAUAUUCCU_GCAA ..........((((.((.(((((((...))))).(((((((....)))))))((((((((((((.....))))..((((....))))))))))))..))...)).))))........... (-22.40 = -22.97 + 0.57)
Location | 14,027,733 – 14,027,840 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -22.55 |
Energy contribution | -23.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.16 |
Mean z-score | -1.90 |
Structure conservation index | 0.77 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14027733 107 - 22224390 -------GAAUAUGGGGAUGUGGCAUCUCUAGAUAGGAUUCCCUAACCAUCAAAAUUAUAGCUAAAGAAAUCUGGUUAAUCCGACUCCAUAGUAGCUAUGCCCUCUCCAUU------UAA -------....(((((((.(.(((.........((((....))))............(((((((........(((.....))).........)))))))))))))))))).------... ( -25.53) >DroSec_CAF1 54366 120 - 1 UUGCUAGGAAUAUGGGGAUGUAGUAUCUCUAGAUAGGAUUCCCUAACCACCAAAAUGAUGUCUAAAGAAAUCGGGUUAACCCAAUUCCAUAGGAGCUAUGCCCUCUCCAUUUUGGAUUAA ......((....((((((.((..((((....))))..)))))))).)).((((((((...............(((....)))........(((.((...)))))...))))))))..... ( -28.40) >DroSim_CAF1 54137 120 - 1 UUGCCAGGAAUAUGGGGAUGUAGUAUCUCUAGAUAGGAUUCCCUUACCAUCAAAAUGAUAUCUAAAGAAAUCGGGUUAACCCGAUUCCAUAGGAGCUAUGCCCUCUCCAUUUUGGAUUAA ...((((((....((((..(((((.(((.((((((((....))....(((....))).)))))).)))(((((((....)))))))........)))))..))))....))))))..... ( -33.60) >consensus UUGC_AGGAAUAUGGGGAUGUAGUAUCUCUAGAUAGGAUUCCCUAACCAUCAAAAUGAUAUCUAAAGAAAUCGGGUUAACCCGAUUCCAUAGGAGCUAUGCCCUCUCCAUUUUGGAUUAA ...((((((....((((..(((((.........((((....))))...............((((..(((.(((((....))))))))..)))).)))))..))))....))))))..... (-22.55 = -23.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:51 2006