| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,009,409 – 14,009,519 |
| Length | 110 |
| Max. P | 0.633557 |
| Location | 14,009,409 – 14,009,519 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.76 |
| Mean single sequence MFE | -36.05 |
| Consensus MFE | -25.16 |
| Energy contribution | -26.66 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14009409 110 + 22224390 CCGUGGAUGUGGGCACCCAGUACGCCUCCAACGGUGGCUACGUCUACAGGAAGUAGGGAUCUUCAACGAAGAGGCCUGCAACUGAACACGAAACAG--UGUCCAUAACUACA-------- ..((((.(((((((((...(((.(((.((...)).)))))).....(((...(((((..(((((...)))))..)))))..)))...........)--)))))))).)))).-------- ( -42.10) >DroVir_CAF1 50627 109 + 1 CUGUCGAUGCCGGCACCCAGUACGCUUCCAACGGCGGCUAUGUCUACAAGAAGAAG-----------UAAGACGCUGGAAACUGUUCACCAAAUCGAAUCAACAUAAUUGUAAUUAACAU ...(((((.(((((....(((.((((......)))))))..((((((........)-----------).)))))))))..............)))))....(((....)))......... ( -21.66) >DroSec_CAF1 36068 109 + 1 CCGUGGAUGUGGGCACCCAGUACGCCUCC-ACGGUGGCUACGUCUACAGGAAGUAGGGAUCUUCAACGAAGAGGCCUGCAACUGAACACGAAACAG--UGUACAUAACUACA-------- ((((((((((((.((((..((........-)))))).)))))))))).))..(((((..(((((...)))))..)))))...((.((((......)--))).))........-------- ( -39.50) >DroSim_CAF1 37506 110 + 1 CCGUGGAUGUGGGCACCCAGUACGCCUCCAACGGUGGCUACGUCUACAGGAAGUAGGGAUCUUCAGCGAAGAGGCCUGCCACUGAACACGAAACAG--UGUACAUAACUACA-------- ((((((((((((.((((...............)))).)))))))))).))..(((((..(((((...)))))..)))))...((.((((......)--))).))........-------- ( -38.46) >DroEre_CAF1 34011 110 + 1 CCGUGGAUGUGGGCACCCAGUACGGCUCCAACGGUGGCUACGUCUACAAGAAGUAGGGAUCUUGAACGAAGAGGCCUGCAACUGAACACGAAAGAG--UGUACAUAAAUACA-------- ..((((((((((.((((.((.....)).....)))).)))))))))).....(((((..((((.....))))..)))))...((.((((......)--))).))........-------- ( -36.80) >DroYak_CAF1 36761 110 + 1 CCGUGGAUGUGGGCACCCAGUACGCCUCCAACGGUGGCUACGUCUACAGGAAGUAGGGAUCUUGAACGAAGAGGCCUGCAACUGAACACGAAAAAG--UGUACAUAAACACA-------- ((((((((((((.((((...............)))).)))))))))).))..(((((..((((.....))))..)))))...((.((((......)--))).))........-------- ( -37.76) >consensus CCGUGGAUGUGGGCACCCAGUACGCCUCCAACGGUGGCUACGUCUACAGGAAGUAGGGAUCUUCAACGAAGAGGCCUGCAACUGAACACGAAACAG__UGUACAUAACUACA________ ..((((((((((.((((...............)))).)))))))))).((..(((((..((((.....))))..)))))..))..................................... (-25.16 = -26.66 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:43 2006