Locus 5386

Sequence ID X_DroMel_CAF1
Location 14,003,640 – 14,003,752
Length 112
Max. P 0.523653
window8740

overview

Window 0

Location 14,003,640 – 14,003,752
Length 112
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 83.34
Mean single sequence MFE -39.73
Consensus MFE -27.33
Energy contribution -28.20
Covariance contribution 0.87
Combinations/Pair 1.24
Mean z-score -1.72
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.523653
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14003640 112 - 22224390
GUGAGUCCAUAGCCUCCAUCGGCGGCCAGUCCCA-ACU--UAAGAUGACUGACAUCGGCGGCGGCAAGGCCGACAAAGGCCAAGGCAAUGACGUAGAACUUCUGCAAUCGG--AUUA
...(((((...((((....(.((.((((((....-)))--...((((.....))))))).)).)...((((......)))).))))......((((.....))))....))--))). ( -37.10)
>DroSec_CAF1 30891 112 - 1
GUGAGUCCAUAGCCUCCGUCGGCGGACAGUCCCA-ACU--UUAGAUGACUGACAUCGGCGGCGGCAAGGCCGACAAAGGCCAAAGCAAUGACGUAGAACUUCUGCAAUCGG--AUUA
...(((((...(((.((((((..(..(((((...-...--......))))).)..)))))).)))..((((......))))...........((((.....))))....))--))). ( -41.30)
>DroSim_CAF1 31383 112 - 1
GUGAGUCCAUAGCCUCCGUCGGCGGACAGUCCCA-ACU--UUAGAUGACUGACAUCGGCGGCGGCAAGGCCGACAAAGGCCAAAGCAAUGACGUAGAACUUCUGCAAUCGG--AUUA
...(((((...(((.((((((..(..(((((...-...--......))))).)..)))))).)))..((((......))))...........((((.....))))....))--))). ( -41.30)
>DroEre_CAF1 30402 112 - 1
GAGAGUCCAUAGCCUCCGUCGACGGACAGGCCCA-ACU--UCAGAUGACUGACAUCGGCGGCGGCGAGGCCGAGAAAGGCGAAUGCAAUGAUGUGGAACUUCUGCAAUGGG--AUCA
..((..((((.(((.(((((((.((......)).-...--((((....))))..))))))).)))...(((......)))...........((..(.....)..)))))).--.)). ( -37.70)
>DroYak_CAF1 32301 112 - 1
GAGAGUCCAUAGCCUCCGUCGGCGGACAGGCCCA-ACU--UCAGAUGACUGACAUCGGCGGCGGCGAGGCCGACAAAGGCCAAUGCAAUGACGUAGAACUUCUGCAAUGGG--AACC
.....(((((.(((.((((((((......)))..-...--...((((.....))))))))).)))..((((......))))...........((((.....)))).)))))--.... ( -39.50)
>DroMoj_CAF1 47355 117 - 1
GAGCUGCCAUAGGCAUAGCCAGAGCCUUGUCCCACGUUGAGCAGGUGACUUACAUCGGCGGCCACUAGGCCGACCAAAGCCAAAGCGAUAACGCAGAACUUCUGCGAUAGACAAGAA
(.((((((...)))..)))).....((((((...((((..((.((((.....))))(((((((....))))).))...))...))))....(((((.....)))))...)))))).. ( -41.50)
>consensus
GAGAGUCCAUAGCCUCCGUCGGCGGACAGUCCCA_ACU__UCAGAUGACUGACAUCGGCGGCGGCAAGGCCGACAAAGGCCAAAGCAAUGACGUAGAACUUCUGCAAUCGG__AUUA
....(((....(((.(((((...((......))..........((((.....))))))))).)))..((((......))))........)))((((.....))))............ (-27.33 = -28.20 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:42 2006