Locus 5384

Sequence ID X_DroMel_CAF1
Location 14,002,601 – 14,002,692
Length 91
Max. P 0.988845
window8738

overview

Window 8

Location 14,002,601 – 14,002,692
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 91.76
Mean single sequence MFE -20.66
Consensus MFE -17.28
Energy contribution -18.32
Covariance contribution 1.04
Combinations/Pair 1.12
Mean z-score -2.17
Structure conservation index 0.84
SVM decision value 2.14
SVM RNA-class probability 0.988845
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14002601 91 - 22224390
ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAACGGUUGAAAGUGUGC
.((((((..((((((((((.((((......)))).)))))))))).)))..............(((((((..........)))))))))). ( -24.10)
>DroSec_CAF1 30032 91 - 1
ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACGUUCAUAAUAAUGGUUGAAAGCGUGC
.((((.(((((((((((((.((((......)))).)))))))))..(((((((((....((....))...)))))).)))))))..)))). ( -22.50)
>DroSim_CAF1 30313 91 - 1
ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAAAGGUUGAAAGCGUGC
.((((....((((((((((.((((......)))).))))))))))...................((((((..........)))))))))). ( -23.10)
>DroEre_CAF1 29410 83 - 1
-------UUAGCUGAUUUUAUGGAUCUCAUUCCGCAA-AUUAGCUUAUAUUAAUAACUUACUGACUUUCAUAACAAAGGUUGAAAGCGUGC
-------..(((((((((..((((......)))).))-))))))).............(((.(.((((((..........)))))))))). ( -16.00)
>DroYak_CAF1 31238 91 - 1
AUAUGGUUUAGCUGAUUUUAUGGCUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAAAGGUUGAAAGCGUGC
....(((..((((((((((.(((........))).)))))))))).))).........(((.(.((((((..........)))))))))). ( -17.60)
>consensus
ACACGGUUCAGCUGAUUUUAUGGAUCUCAUUCCGCAAAAUUAGCUUAUCUUAUUAACUUACUGACUUUCAUAAUAAAGGUUGAAAGCGUGC
.((((....((((((((((.((((......)))).))))))))))...................((((((..........)))))))))). (-17.28 = -18.32 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:40 2006